View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2582_low_5 (Length: 423)
Name: NF2582_low_5
Description: NF2582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2582_low_5 |
 | |
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| [»] scaffold0002 (1 HSPs) |
| | |
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| [»] scaffold0057 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 14 - 407
Target Start/End: Complemental strand, 9805578 - 9805184
Alignment:
| Q |
14 |
atatcaaataaggaaaacaaggtgatatatatgtggcttactttttagatttttccattgatttgagaaatataaaagttaatagttatgcctcataaaa |
113 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9805578 |
atatcaaataaggaaaacaaggtgat-tatatgtggcttactttttagatttttccattgatttgagaaatataaaagttaatagttatgcctcataaaa |
9805480 |
T |
|
| Q |
114 |
ctataatttattatttgtcaatnnnnnnnnnn--ctataatttataactcttgcaccgactatataagaataccgttcatttgtaggcacagatgcaacc |
211 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9805479 |
ctataatttattatttgtcaataaaaaaaaaaaactataatttataactcttgcaccgactatataagaataccgttcatttgtaggcacagatgcaacc |
9805380 |
T |
|
| Q |
212 |
taatgggattgactgtgaacattatgtgatgaagaatatgctggacgttgtctgtgctagtattactaaatcttggatggaggaatttcaattttatgat |
311 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
9805379 |
taatgggattgactgtgaacattatgtgatgaagaatatgctggacgttgtctgtgctagtattactaaatcttggatggaggaatttcagttttatgat |
9805280 |
T |
|
| Q |
312 |
aacttatatttgtataccatatgtattttcaacgacataaaagtaggtattaaattattgtacaaattgtaagtattcaattatccaacaacatta |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
9805279 |
aacttatatttgtataccatatgtattttcaacgacataaaagtaggtattcaattattatacaaattgtaagtattcaattatccaacaacatta |
9805184 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 206 - 314
Target Start/End: Complemental strand, 7688945 - 7688837
Alignment:
| Q |
206 |
gcaacctaatgggattgactgtgaacattatgtgatgaagaatatgctggacgttgtctgtgctagtattactaaatcttggatggaggaatttcaattt |
305 |
Q |
| |
|
|||||||||||| | ||| |||| | | |||||||||||||||||||| || | ||| ||||| ||||||||| ||||||||||||| |||| ||||| |
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| T |
7688945 |
gcaacctaatggcaatgattgtggatactatgtgatgaagaatatgctagatatcatctctgctaatattactaagtcttggatggaggtattttaattt |
7688846 |
T |
|
| Q |
306 |
tatgataac |
314 |
Q |
| |
|
||||||||| |
|
|
| T |
7688845 |
tatgataac |
7688837 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 184 - 314
Target Start/End: Original strand, 6191191 - 6191321
Alignment:
| Q |
184 |
ccgttcatttgtaggcacagatgcaacctaatgggattgactgtgaacattatgtgatgaagaatatgctggacgttgtctgtgctagtattactaaatc |
283 |
Q |
| |
|
|||||||||||||| || | |||||||||||| | ||| |||| | | |||||||||||||||||||| || | ||| ||||| ||||||||| || |
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|
| T |
6191191 |
ccgttcatttgtagccaagaaagcaacctaatggcaatgattgtggatactatgtgatgaagaatatgctagatatcatctctgctaatattactaagtc |
6191290 |
T |
|
| Q |
284 |
ttggatggaggaatttcaattttatgataac |
314 |
Q |
| |
|
||||||||||| |||| |||||||||||||| |
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|
| T |
6191291 |
ttggatggaggtattttaattttatgataac |
6191321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 206 - 314
Target Start/End: Complemental strand, 21873707 - 21873599
Alignment:
| Q |
206 |
gcaacctaatgggattgactgtgaacattatgtgatgaagaatatgctggacgttgtctgtgctagtattactaaatcttggatggaggaatttcaattt |
305 |
Q |
| |
|
|||||||||||| | ||| |||| | | |||||||||||||||||||| || | ||| ||||| ||||||||| ||||||||||||| |||| ||||| |
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| T |
21873707 |
gcaacctaatggcaatgattgtggatactatgtgatgaagaatatgctagatatcatctctgctaatattactaagtcttggatggaggtattttaattt |
21873608 |
T |
|
| Q |
306 |
tatgataac |
314 |
Q |
| |
|
||||||||| |
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|
| T |
21873607 |
tatgataac |
21873599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 206 - 314
Target Start/End: Complemental strand, 484372 - 484264
Alignment:
| Q |
206 |
gcaacctaatgggattgactgtgaacattatgtgatgaagaatatgctggacgttgtctgtgctagtattactaaatcttggatggaggaatttcaattt |
305 |
Q |
| |
|
|||||||||||| | ||| |||| | | |||||||||||||||||||| || | ||| ||||| ||||||||| ||||||||||||| |||| ||||| |
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|
| T |
484372 |
gcaacctaatggcaatgattgtggatactatgtgatgaagaatatgctagatatcatctctgctaatattactaagtcttggatggaggtattttaattt |
484273 |
T |
|
| Q |
306 |
tatgataac |
314 |
Q |
| |
|
||||||||| |
|
|
| T |
484272 |
tatgataac |
484264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 206 - 314
Target Start/End: Original strand, 16434588 - 16434696
Alignment:
| Q |
206 |
gcaacctaatgggattgactgtgaacattatgtgatgaagaatatgctggacgttgtctgtgctagtattactaaatcttggatggaggaatttcaattt |
305 |
Q |
| |
|
|||||||||||| | ||| |||| | | |||||||||||||||||||| || | ||| ||||| ||||||||| ||||||||||||| |||| ||||| |
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|
| T |
16434588 |
gcaacctaatggcaatgattgtggatactatgtgatgaagaatatgctagatatcatctctgctaatattactaagtcttggatggaggtattttaattt |
16434687 |
T |
|
| Q |
306 |
tatgataac |
314 |
Q |
| |
|
||||||||| |
|
|
| T |
16434688 |
tatgataac |
16434696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 206 - 314
Target Start/End: Complemental strand, 33260684 - 33260576
Alignment:
| Q |
206 |
gcaacctaatgggattgactgtgaacattatgtgatgaagaatatgctggacgttgtctgtgctagtattactaaatcttggatggaggaatttcaattt |
305 |
Q |
| |
|
|||||||||||| | ||| |||| | | |||||||||||||||||||| || | ||| ||||| ||||||||| ||||||||||||| |||| ||||| |
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|
| T |
33260684 |
gcaacctaatggcaatgattgtggatactatgtgatgaagaatatgctagatatcatctctgctaatattactaagtcttggatggaggtattttaattt |
33260585 |
T |
|
| Q |
306 |
tatgataac |
314 |
Q |
| |
|
||||||||| |
|
|
| T |
33260584 |
tatgataac |
33260576 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0057 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0057
Description:
Target: scaffold0057; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 206 - 314
Target Start/End: Complemental strand, 78913 - 78805
Alignment:
| Q |
206 |
gcaacctaatgggattgactgtgaacattatgtgatgaagaatatgctggacgttgtctgtgctagtattactaaatcttggatggaggaatttcaattt |
305 |
Q |
| |
|
|||||||||||| | ||| |||| | | |||||||||||||||||| | || | ||| ||||| ||||||||| ||||||||||||| |||| ||||| |
|
|
| T |
78913 |
gcaacctaatggcaatgattgtggatactatgtgatgaagaatatgttagatatcatctctgctaatattactaagtcttggatggaggtattttaattt |
78814 |
T |
|
| Q |
306 |
tatgataac |
314 |
Q |
| |
|
||||||||| |
|
|
| T |
78813 |
tatgataac |
78805 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 234 - 343
Target Start/End: Original strand, 25034031 - 25034139
Alignment:
| Q |
234 |
tatgtgatgaagaatatgctggacgttgtctgtgctagtattactaaatcttggatggaggaatttcaattttatgataacttatatttgtataccatat |
333 |
Q |
| |
|
||||||||||||||||| | || || ||| ||||| |||||||| ||||||||||||| |||| ||||||||||||||||| || | ||||| |||| |
|
|
| T |
25034031 |
tatgtgatgaagaatatagtagatattatctctgctaacattactaagtcttggatggaggtattttaattttatgataactta-atgtttatactatat |
25034129 |
T |
|
| Q |
334 |
gtattttcaa |
343 |
Q |
| |
|
||||| |||| |
|
|
| T |
25034130 |
gtattgtcaa |
25034139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 234 - 317
Target Start/End: Complemental strand, 25028704 - 25028621
Alignment:
| Q |
234 |
tatgtgatgaagaatatgctggacgttgtctgtgctagtattactaaatcttggatggaggaatttcaattttatgataactta |
317 |
Q |
| |
|
||||||||||||||||| || || || ||| ||||| || |||| ||||||||||||| |||| ||||||||||||||||| |
|
|
| T |
25028704 |
tatgtgatgaagaatatactagatattatctctgctaacatcgctaagtcttggatggaggtattttaattttatgataactta |
25028621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 272 - 314
Target Start/End: Complemental strand, 2947945 - 2947903
Alignment:
| Q |
272 |
tattactaaatcttggatggaggaatttcaattttatgataac |
314 |
Q |
| |
|
||||||||| ||||||||||||| |||| |||||||||||||| |
|
|
| T |
2947945 |
tattactaagtcttggatggaggtattttaattttatgataac |
2947903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 314
Target Start/End: Complemental strand, 9009580 - 9009491
Alignment:
| Q |
225 |
tgtgaacattatgtgatgaagaatatgctggacgttgtctgtgctagtattactaaatcttggatggaggaatttcaattttatgataac |
314 |
Q |
| |
|
|||||| | |||||||||||||| ||||| || | ||| ||||| ||||||||| |||| |||||||| |||| |||||||| ||||| |
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|
| T |
9009580 |
tgtgaatactatgtgatgaagaaaatgctagatatcatctctgctaatattactaagtcttagatggaggtattttaattttataataac |
9009491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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