View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2582_low_9 (Length: 301)
Name: NF2582_low_9
Description: NF2582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2582_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 231; Significance: 1e-127; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 18 - 284
Target Start/End: Original strand, 4358916 - 4359182
Alignment:
| Q |
18 |
attaacggtcacaatgtcgtcgtcttgtgtgagaggcgcgtgagtacacgtgaagaagttatgacgcttgttgtttagggcaaatttgtaacttggggtg |
117 |
Q |
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| T |
4358916 |
attaacggttacaatgtcgtcttcttttgtgagaggcgcgtgagcacacgtgaagaagttatgacgcttgttgtttagggcaaatttgtagttgggtgtg |
4359015 |
T |
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| Q |
118 |
ttgctgcagctgaactcatactcccttgtggtagagaggcgtgtgtcgttacggcggcttgaggtggagccaccatggtggtgatgaaacatgaggttgg |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4359016 |
ttgctgcagctgaactcatactcccttgtggtagagaggcgtgtgtcattacggcggcttgaggtggagccaccatggtggtgatgaaacatgaggttgg |
4359115 |
T |
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| Q |
218 |
tgatggcttttccggcgagcttgccgcggcgtttaaccatcatgttgaggtccatcattagttttcc |
284 |
Q |
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| T |
4359116 |
tgatggcttttccggcgagcttgccgcggcgtttaaccatcatgttgaggtccatcattagttttcc |
4359182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 18 - 284
Target Start/End: Complemental strand, 4353354 - 4353089
Alignment:
| Q |
18 |
attaacggtcacaatgtcgtcgtcttgtgtgagaggcgcgtgagtacacgtgaagaagttatgacgcttgttgtttagggcaaatttgtaacttggggtg |
117 |
Q |
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| T |
4353354 |
attaacggttacaatgtcgtcttcttttgtgagaggcgcgtgagcacacgtgaagaagttatgacgcttgttgtttagggcaaatttgtagttgggtgtg |
4353255 |
T |
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| Q |
118 |
ttgctgcagctgaactcatactcccttgtggtagagaggcgtgtgtcgttacggcggcttgaggtggagccaccatggtggtgatgaaacatgaggttgg |
217 |
Q |
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| T |
4353254 |
ttgctgcagctgaactcatactcccttgtggtagagaggcgtgtgtcattacggcggcttgaggtggagccaccatggtggtgatgaaacatgaggttgg |
4353155 |
T |
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| Q |
218 |
tgatggcttttccggcgagcttgccgcggcgtttaaccatcatgttgaggtccatcattagttttcc |
284 |
Q |
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| T |
4353154 |
tgatggcttttccggcaagctt-ctacggcgtttgaccatcatgttgaggtccatcattagttttcc |
4353089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 18 - 284
Target Start/End: Complemental strand, 4349977 - 4349702
Alignment:
| Q |
18 |
attaacggtcacaatgtcgtcgtcttgtgtgagaggcgcgtgagtacacgtgaagaagttat---------gacgcttgttgtttagggcaaatttgtaa |
108 |
Q |
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||||||||| |||||||| ||||||||||||||||||||||||| |||||||||||||| | | || |||||||| | | ||||||||| |
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| T |
4349977 |
attaacggtaacaatgtcatcgtcttgtgtgagaggcgcgtgagcacacgtgaagaagtggttgttgcggtggcgtttgttgttaaatgaaaatttgtat |
4349878 |
T |
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| Q |
109 |
cttggggtgttgctgcagctgaactcatactcccttgtggtagagaggcgtgtgtcgttacggcggcttgaggtggagccaccatggtggtgatgaaaca |
208 |
Q |
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| T |
4349877 |
ttaggggtgttgctacagctgaactcatactcccttgtggtagagaggcgtgtgtcgttacgacggcttgaggtggagccaccgtggtggtgatgaaaca |
4349778 |
T |
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| Q |
209 |
tgaggttggtgatggcttttccggcgagcttgccgcggcgtttaaccatcatgttgaggtccatcattagttttcc |
284 |
Q |
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| T |
4349777 |
tgaggttggtgatggcttttccggcgagcttgccgcggtgtttaaccatcatgttgaggtccatcattagttttcc |
4349702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 169 - 281
Target Start/End: Original strand, 43475430 - 43475548
Alignment:
| Q |
169 |
cggcggcttgaggtggagccaccatggtggtgatga------aacatgaggttggtgatggcttttccggcgagcttgccgcggcgtttaaccatcatgt |
262 |
Q |
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| T |
43475430 |
cggcggcttgaggtggagccaccgtggttgtggtgatggtggaacattagattggcaatggcttttccggcgagcttgctgcggcgtttgagcatcatgt |
43475529 |
T |
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| Q |
263 |
tgaggtccatcattagttt |
281 |
Q |
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| ||| ||||||||||||| |
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| T |
43475530 |
ttaggcccatcattagttt |
43475548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 220 - 284
Target Start/End: Original strand, 43486106 - 43486170
Alignment:
| Q |
220 |
atggcttttccggcgagcttgccgcggcgtttaaccatcatgttgaggtccatcattagttttcc |
284 |
Q |
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| T |
43486106 |
atggcttttccggcaagcttgctgcggcgtttgagcatcatgtttaggcccatcatcagttttcc |
43486170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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