View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2583-Insertion-2 (Length: 516)
Name: NF2583-Insertion-2
Description: NF2583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2583-Insertion-2 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 494; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 15 - 516
Target Start/End: Complemental strand, 7666338 - 7665837
Alignment:
| Q |
15 |
ctcaaacaactgctgccaaaatttacttgtaaaaactttatctctatctgacacaatggacttaggtatgccatgtaatttgacgatattagtcataaaa |
114 |
Q |
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| T |
7666338 |
ctcaaacaactgctgccaaaatttacttgtaaaaactttatctctatctgacacaatggacttaggtatgccatgtaatttgacgatattagtcataaaa |
7666239 |
T |
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| Q |
115 |
acttcatcaacagatttactagaatagtcaggcttcaatggcatgaaatgagcgtacttagtcaatctatccacaaccactagaatggctgtaaagccac |
214 |
Q |
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| T |
7666238 |
acttcatcaacagatttactagaatagtcaggcttcaatggcatgaaatgagcgtacttagtcaatctatccacaaccactagaatggctgtaaagccac |
7666139 |
T |
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| Q |
215 |
aagataatggcaagtcagtaataaaatccatagtaacatcttcccatacctgagtgggtattggtagaggctgcaacaaccctgctggcagtgtagtcat |
314 |
Q |
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| T |
7666138 |
aagataatggcaagtcagtaataaaatccatagtaacatcttcccatacctgagtgggtattggcagaggctgcaacaaccctgctggcagtgtagtcat |
7666039 |
T |
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| Q |
315 |
atgtttagcctgctgacagatcagacattctgtgatgaacttgtgaaccgccgtcttcatatttggccaataaaattcagcacttattcgtgccatagtc |
414 |
Q |
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| T |
7666038 |
atgtttagcctgctgacagatcagacattctgtgatgaacttgtgaaccgccgtcttcatatttggccaataaaattcagcacttattcgtgccatagtc |
7665939 |
T |
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| Q |
415 |
ctagtaatgcctgcatgccctccaatcggtgaagcatgaaactcttgcaacacttgttggattaatgaactatccaccggcaaaactggtttgttcttcc |
514 |
Q |
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| T |
7665938 |
ctagtaatgcctgcatgccctccaatcggtgaagcatgaaactcttgcaacacttgttggattaatgaactatccaccggcaaaactagtttgttcttcc |
7665839 |
T |
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| Q |
515 |
ag |
516 |
Q |
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| T |
7665838 |
ag |
7665837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 18 - 266
Target Start/End: Complemental strand, 31284699 - 31284451
Alignment:
| Q |
18 |
aaacaactgctgccaaaatttacttgtaaaaactttatctctatctgacacaatggacttaggtatgccatgtaatttgacgatattagtcataaaaact |
117 |
Q |
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| T |
31284699 |
aaacaaatgctgccagaatttgctggtaaataccttgtctctatcagagataattgacttaggcattccgtgtaattttactacattattcataaatgcc |
31284600 |
T |
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| Q |
118 |
tcatcaacagatttactagaatagtcaggcttcaatggcatgaaatgagcgtacttagtcaatctatccacaaccactagaatggctgtaaagccacaag |
217 |
Q |
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| T |
31284599 |
tcagcaacagtcctacttgaataatcggctttcaagggcatgaaatgagcatatttactcagcctatctacgacgaccataataacagtaaaaccaaaag |
31284500 |
T |
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| Q |
218 |
ataatggcaagtcagtaataaaatccatagtaacatcttcccatacctg |
266 |
Q |
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| T |
31284499 |
atagtggcaatccagtaataaaatccatagttacatcatcacatacctg |
31284451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 266
Target Start/End: Original strand, 9620471 - 9620719
Alignment:
| Q |
18 |
aaacaactgctgccaaaatttacttgtaaaaactttatctctatctgacacaatggacttaggtatgccatgtaatttgacgatattagtcataaaaact |
117 |
Q |
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| T |
9620471 |
aaacaaatgctgccagaatttgctggtaaataccttgtctctatcagagataattgacttaggcattccgtgtaattttactacataattcacaaatgcc |
9620570 |
T |
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| Q |
118 |
tcatcaacagatttactagaatagtcaggcttcaatggcatgaaatgagcgtacttagtcaatctatccacaaccactagaatggctgtaaagccacaag |
217 |
Q |
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| T |
9620571 |
tcagcaacagtcctatttgaataatcagctttcaagggcatgaaatgagcatatttactcagcctatctacgacgaccataataacagtaaaaccaaaag |
9620670 |
T |
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| Q |
218 |
ataatggcaagtcagtaataaaatccatagtaacatcttcccatacctg |
266 |
Q |
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| T |
9620671 |
atagtggcaatccagtaataaaatccatagttacatcatcccatacctg |
9620719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 14311594 - 14311532
Alignment:
| Q |
18 |
aaacaactgctgccaaaatttacttgtaaaaactttatctctatctgacacaatggacttagg |
80 |
Q |
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| T |
14311594 |
aaacaagtgctgccaaaaattactagtaaaaaccttatctctatctgagataatcgacttagg |
14311532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 10996371 - 10996298
Alignment:
| Q |
18 |
aaacaactgctgccaaaatttacttgtaaaaactttatctctatctgacacaatggacttaggtatgccatgta |
91 |
Q |
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| T |
10996371 |
aaacaagttctgccagaatccacttgtaaaaaccttgtctctatttgaaacaatggacttgggaatgccatgta |
10996298 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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