View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2583-Insertion-4 (Length: 230)
Name: NF2583-Insertion-4
Description: NF2583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2583-Insertion-4 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 6 - 230
Target Start/End: Original strand, 28091762 - 28091986
Alignment:
| Q |
6 |
taaacataaacttgaaaatacattgctcatgttaggatataattgcattttactaatctagctatataatactatttcaatctaatannnnnnncttcag |
105 |
Q |
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| T |
28091762 |
taaatataaacttgaaaatacattgctcatgttaggatataattgcattttactaatctagctatataatactatttcaatctaatatttttttcttcag |
28091861 |
T |
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| Q |
106 |
gtacaccggcgtatggctgataactcgttgtagttcactgatgaatagcggttataatgtcaatgattggcctatttgtctagctgtcctcattttttac |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28091862 |
gtacaccggcgtatggctgataactcgttgtagttcactgatgaatagcggttataatgtcaatgattggcctatttgtctagctgtcctcattttttac |
28091961 |
T |
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| Q |
206 |
ggtatagttgctcgtattgtggcct |
230 |
Q |
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| T |
28091962 |
ggtatagttgctcgtattgtggcct |
28091986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 104 - 201
Target Start/End: Complemental strand, 41040022 - 41039925
Alignment:
| Q |
104 |
aggtacaccggcgtatggctgataactcgttgtagttcactgatgaatagcggttataatgtcaatgattggcctatttgtctagctgtcctcatttt |
201 |
Q |
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|||||||| || |||||| |||||||||||||||||||||||||||| || |||||| || ||||||| |||| ||||||||| ||| |||||||| |
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| T |
41040022 |
aggtacactggagtatggttgataactcgttgtagttcactgatgaacagtggttatgatctcaatgaatggctcatttgtctacttgtactcatttt |
41039925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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