View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2583R-Insertion-10 (Length: 400)
Name: NF2583R-Insertion-10
Description: NF2583R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2583R-Insertion-10 |
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Alignment Details
Target: chr1 (Bit Score: 177; Significance: 3e-95; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 212 - 392
Target Start/End: Complemental strand, 28091586 - 28091406
Alignment:
| Q |
212 |
catctaatcatgattcatgaggtttcattaatttagtaaccttgtcattggttaaactgaggggaataagaagtcactaattaaaacatacctttcagca |
311 |
Q |
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| T |
28091586 |
catctaatcatgattcatgaggtttcattaatttagtaaccttgtcattggttaaactgaggggaataagaagtcactaattaaaacatacctttcagca |
28091487 |
T |
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| Q |
312 |
tttgcaataataaaggcctccaaagcccaatttgggtaacacattttaattaggatcttcataaaggtagtatctcttgtt |
392 |
Q |
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| T |
28091486 |
tttgcaataataaaggcctccaaagcccattttgggtaacacattttaattaggatcttcataaaggtagtatctcttgtt |
28091406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 10 - 191
Target Start/End: Complemental strand, 28091765 - 28091584
Alignment:
| Q |
10 |
tttacatcttataacagttgtaagatattgtcttttcctaagttgggtatattattacccaaaaatatgttaagcaaggtccaaaagtagtagtgagggg |
109 |
Q |
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| T |
28091765 |
tttacattttataacagttgtaagatattgtcttttcctaagttgggtatattattacccaaaaatatgttaagcaaggtccaaaagtagtagtgagggg |
28091666 |
T |
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| Q |
110 |
ttgagggcaatgcatgaattatacatatcaacagaaaaatcattgatgctatgatcccacacctgaacttggtttttcacat |
191 |
Q |
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| T |
28091665 |
ttgagggcaatgcatgaattatacatatcaacagaaaaagcattgatgctatgatcccacacctgaacttggtttttcacat |
28091584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 295 - 388
Target Start/End: Original strand, 41040488 - 41040581
Alignment:
| Q |
295 |
aaacatacctttcagcatttgcaataataaaggcctccaaagcccaatttgggtaacacattttaattaggatcttcataaaggtagtatctct |
388 |
Q |
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| T |
41040488 |
aaacatacctttcagcatttgcaatgataaaggcctccaaagcccatttaggatagcacaattgtactaagatcttcataaatatagtatctct |
41040581 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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