View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2583R-Insertion-3 (Length: 220)

Name: NF2583R-Insertion-3
Description: NF2583R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2583R-Insertion-3
NF2583R-Insertion-3
[»] chr8 (13 HSPs)
chr8 (9-154)||(43617386-43617529)
chr8 (151-219)||(30470864-30470932)
chr8 (154-219)||(36912377-36912442)
chr8 (152-219)||(18029545-18029612)
chr8 (154-218)||(26632200-26632264)
chr8 (179-219)||(41477168-41477208)
chr8 (178-219)||(8610027-8610068)
chr8 (154-219)||(34955712-34955776)
chr8 (177-219)||(38584940-38584982)
chr8 (179-219)||(4625540-4625580)
chr8 (147-219)||(35931815-35931887)
chr8 (179-219)||(40283460-40283500)
chr8 (179-219)||(43524437-43524477)
[»] chr2 (6 HSPs)
chr2 (9-154)||(275176-275311)
chr2 (152-219)||(37245461-37245528)
chr2 (179-219)||(17929302-17929342)
chr2 (164-219)||(14152114-14152169)
chr2 (177-219)||(13151531-13151573)
chr2 (179-219)||(17485804-17485844)
[»] chr5 (7 HSPs)
chr5 (154-216)||(41263322-41263384)
chr5 (152-219)||(8176349-8176416)
chr5 (152-219)||(41153052-41153119)
chr5 (154-219)||(37882475-37882540)
chr5 (176-219)||(14278811-14278854)
chr5 (152-210)||(42608099-42608157)
chr5 (179-219)||(39008465-39008505)
[»] chr7 (5 HSPs)
chr7 (152-216)||(37888511-37888575)
chr7 (154-219)||(22737641-22737706)
chr7 (189-219)||(37887843-37887873)
chr7 (154-219)||(22191182-22191246)
chr7 (179-219)||(26812099-26812139)
[»] scaffold0100 (1 HSPs)
scaffold0100 (155-219)||(30584-30648)
[»] chr4 (4 HSPs)
chr4 (152-214)||(47750275-47750337)
chr4 (154-219)||(35394877-35394942)
chr4 (176-219)||(34199315-34199358)
chr4 (179-219)||(13094436-13094476)
[»] chr3 (11 HSPs)
chr3 (154-219)||(41890497-41890561)
chr3 (154-219)||(46572971-46573036)
chr3 (152-220)||(25832769-25832836)
chr3 (187-219)||(35424055-35424087)
chr3 (179-219)||(42601748-42601788)
chr3 (178-220)||(36178749-36178791)
chr3 (178-219)||(4045966-4046007)
chr3 (178-219)||(10426477-10426518)
chr3 (178-219)||(35472672-35472713)
chr3 (179-219)||(26165600-26165640)
chr3 (179-219)||(31170271-31170311)
[»] chr1 (6 HSPs)
chr1 (154-219)||(44651032-44651096)
chr1 (179-219)||(41542313-41542353)
chr1 (176-219)||(3755074-3755117)
chr1 (177-219)||(44334270-44334312)
chr1 (182-219)||(8464085-8464122)
chr1 (179-219)||(29523686-29523726)
[»] scaffold0012 (1 HSPs)
scaffold0012 (179-219)||(124001-124041)
[»] chr6 (3 HSPs)
chr6 (185-219)||(197795-197829)
chr6 (185-219)||(29428564-29428598)
chr6 (176-220)||(8669872-8669916)


Alignment Details
Target: chr8 (Bit Score: 117; Significance: 9e-60; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 9 - 154
Target Start/End: Original strand, 43617386 - 43617529
Alignment:
Q  9 tataactcatttagattcagtaaaatcagcatcaatcacatccccatctactcccttgcctgatgatgattctgacttcttctgaggggccagactcgct 108  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||   ||||||||||||||||||||||    
T  43617386 tataactcatttagagtcagtaaaatcagcatcaatcacatccccatctgctcccttgcctgatgatgattctga---cttctgaggggccagactcgct 43617482  T
Q  109 -accaggtggtgtaggtcctgctgcatctgcagctccaggttggtta 154  Q
     ||||||||||||||||||||||||||||||||||||||||||||||    
T  43617483 aaccaggtggtgtaggtcctgctgcatctgcagctccaggttggtta 43617529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 151 - 219
Target Start/End: Complemental strand, 30470932 - 30470864
Alignment:
Q  151 gttagaccatccccaatggtttaagacattcaacaccattcaacatccattttttcaattcccaacact 219  Q
    |||||||||||||||||||||||   ||||||||||||||||| |||||||||||||||||||||||||    
T  30470932 gttagaccatccccaatggtttacaccattcaacaccattcaagatccattttttcaattcccaacact 30470864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 154 - 219
Target Start/End: Original strand, 36912377 - 36912442
Alignment:
Q  154 agaccatccccaatggtttaagacattcaacaccattcaacatccattttttcaattcccaacact 219  Q
    |||||||||||||||||| || | |||||||||||||||||| ||| |||||||||||||||||||    
T  36912377 agaccatccccaatggttcaacatattcaacaccattcaacacccactttttcaattcccaacact 36912442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 152 - 219
Target Start/End: Complemental strand, 18029612 - 18029545
Alignment:
Q  152 ttagaccatccccaatggtttaagacattcaacaccattcaacatccattttttcaattcccaacact 219  Q
    |||||||||| ||||||||| || |||||||||||||||| ||| ||| |||||||||||||||||||    
T  18029612 ttagaccatctccaatggttcaacacattcaacaccattcgacacccactttttcaattcccaacact 18029545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 154 - 218
Target Start/End: Complemental strand, 26632264 - 26632200
Alignment:
Q  154 agaccatccccaatggtttaagacattcaacaccattcaacatccattttttcaattcccaacac 218  Q
    ||||||||| ||||||||||   ||||||||||||||||||| ||| ||||||||||||||||||    
T  26632264 agaccatcctcaatggtttacaccattcaacaccattcaacacccactttttcaattcccaacac 26632200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 179 - 219
Target Start/End: Original strand, 41477168 - 41477208
Alignment:
Q  179 ttcaacaccattcaacatccattttttcaattcccaacact 219  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  41477168 ttcaacaccattcaacatccactttttcaattcccaacact 41477208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 219
Target Start/End: Complemental strand, 8610068 - 8610027
Alignment:
Q  178 attcaacaccattcaacatccattttttcaattcccaacact 219  Q
    ||||||||||||||||||| || |||||||||||||||||||    
T  8610068 attcaacaccattcaacattcactttttcaattcccaacact 8610027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 219
Target Start/End: Complemental strand, 34955776 - 34955712
Alignment:
Q  154 agaccatccccaatggtttaagacattcaacaccattcaacatccattttttcaattcccaacact 219  Q
    |||||||||||||||||||    | ||||||||||||||||| ||| |||||||||||||||||||    
T  34955776 agaccatccccaatggtttttttctttcaacaccattcaaca-ccactttttcaattcccaacact 34955712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 219
Target Start/End: Complemental strand, 38584982 - 38584940
Alignment:
Q  177 cattcaacaccattcaacatccattttttcaattcccaacact 219  Q
    |||||||||||||||||||  || |||||||||||||||||||    
T  38584982 cattcaacaccattcaacacacactttttcaattcccaacact 38584940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 219
Target Start/End: Complemental strand, 4625580 - 4625540
Alignment:
Q  179 ttcaacaccattcaacatccattttttcaattcccaacact 219  Q
    |||||||||||||||||  || |||||||||||||||||||    
T  4625580 ttcaacaccattcaacactcactttttcaattcccaacact 4625540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 219
Target Start/End: Original strand, 35931815 - 35931887
Alignment:
Q  147 gttggttagaccatccccaatggtttaagacattcaacaccattcaacatccattttttcaattcccaacact 219  Q
    ||||||||||||||   |||||||  || | |||||||| | ||||||||||| |||||||||| ||||||||    
T  35931815 gttggttagaccatttacaatggtaaaacaaattcaacaaccttcaacatccactttttcaatttccaacact 35931887  T

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Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 219
Target Start/End: Original strand, 40283460 - 40283500
Alignment:
Q  179 ttcaacaccattcaacatccattttttcaattcccaacact 219  Q
    ||||| ||| ||||||||||| |||||||||||||||||||    
T  40283460 ttcaatacctttcaacatccactttttcaattcccaacact 40283500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 219
Target Start/End: Complemental strand, 43524477 - 43524437
Alignment:
Q  179 ttcaacaccattcaacatccattttttcaattcccaacact 219  Q
    ||||| ||| ||||||||||| |||||||||||||||||||    
T  43524477 ttcaatacccttcaacatccactttttcaattcccaacact 43524437  T

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Target: chr2 (Bit Score: 87; Significance: 7e-42; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 9 - 154
Target Start/End: Complemental strand, 275311 - 275176
Alignment:
Q  9 tataactcatttagattcagtaaaatcagcatcaatcacatccccatctactcccttgcctgatgatgattctgacttcttctgaggggccagactcgct 108  Q
    ||||||||||||||| |||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||           |||||||||||||||    
T  275311 tataactcatttagagtcagtaaaatcagcatcaatcacatctccatctgctcccttgcctgatgatgagtctgt----------ggggccagactcgct 275222  T
Q  109 accaggtggtgtaggtcctgctgcatctgcagctccaggttggtta 154  Q
    |||||||||||||||||||||||||||||||||||| |||||||||    
T  275221 accaggtggtgtaggtcctgctgcatctgcagctccgggttggtta 275176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 152 - 219
Target Start/End: Original strand, 37245461 - 37245528
Alignment:
Q  152 ttagaccatccccaatggtttaagacattcaacaccattcaacatccattttttcaattcccaacact 219  Q
    |||||||||||||||||||| || | ||| |||||||||||||| ||| |||||||||||||||||||    
T  37245461 ttagaccatccccaatggttcaacatatttaacaccattcaacacccactttttcaattcccaacact 37245528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 219
Target Start/End: Complemental strand, 17929342 - 17929302
Alignment:
Q  179 ttcaacaccattcaacatccattttttcaattcccaacact 219  Q
    ||||| ||| |||||||||||||||||||||||||||||||    
T  17929342 ttcaatacccttcaacatccattttttcaattcccaacact 17929302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 219
Target Start/End: Complemental strand, 14152169 - 14152114
Alignment:
Q  164 caatggtttaagacattcaacaccattcaacatccattttttcaattcccaacact 219  Q
    |||||||| ||  ||||||||| ||||||||| ||| |||||||||||||||||||    
T  14152169 caatggttaaaaccattcaacaacattcaacacccactttttcaattcccaacact 14152114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 219
Target Start/End: Complemental strand, 13151573 - 13151531
Alignment:
Q  177 cattcaacaccattcaacatccattttttcaattcccaacact 219  Q
    ||||||||| ||||||||| ||| |||||||||||||||||||    
T  13151573 cattcaacaacattcaacacccactttttcaattcccaacact 13151531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 219
Target Start/End: Original strand, 17485804 - 17485844
Alignment:
Q  179 ttcaacaccattcaacatccattttttcaattcccaacact 219  Q
    ||||| ||| ||||||||||| |||||||||||||||||||    
T  17485804 ttcaatacccttcaacatccactttttcaattcccaacact 17485844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 154 - 216
Target Start/End: Original strand, 41263322 - 41263384
Alignment:
Q  154 agaccatccccaatggtttaagacattcaacaccattcaacatccattttttcaattcccaac 216  Q
    |||||||||||||||||| || |||||||||||||||||||||||| ||||||||||||||||    
T  41263322 agaccatccccaatggttcaacacattcaacaccattcaacatccactttttcaattcccaac 41263384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 152 - 219
Target Start/End: Complemental strand, 8176416 - 8176349
Alignment:
Q  152 ttagaccatccccaatggtttaagacattcaacaccattcaacatccattttttcaattcccaacact 219  Q
    |||||||||||||||||||| || |||||||||| ||||||||| ||| |||||||||||||||||||    
T  8176416 ttagaccatccccaatggttcaacacattcaacatcattcaacacccactttttcaattcccaacact 8176349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 152 - 219
Target Start/End: Complemental strand, 41153119 - 41153052
Alignment:
Q  152 ttagaccatccccaatggtttaagacattcaacaccattcaacatccattttttcaattcccaacact 219  Q
    ||||||||||||||||  || || ||||||||||  |||||||||||||||||||||||| |||||||    
T  41153119 ttagaccatccccaattcttaaacacattcaacaatattcaacatccattttttcaattctcaacact 41153052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 219
Target Start/End: Complemental strand, 37882540 - 37882475
Alignment:
Q  154 agaccatccccaatggtttaagacattcaacaccattcaacatccattttttcaattcccaacact 219  Q
    ||||||||  |||||||  || |||||||||| | ||||||| |||||||||||||||||||||||    
T  37882540 agaccatctacaatggtgaaaaacattcaacaacgttcaacacccattttttcaattcccaacact 37882475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 219
Target Start/End: Original strand, 14278811 - 14278854
Alignment:
Q  176 acattcaacaccattcaacatccattttttcaattcccaacact 219  Q
    |||||||||| || |||||| |||||||||||||||||||||||    
T  14278811 acattcaacaacactcaacacccattttttcaattcccaacact 14278854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 210
Target Start/End: Complemental strand, 42608157 - 42608099
Alignment:
Q  152 ttagaccatccccaatggtttaagacattcaacaccattcaacatccattttttcaatt 210  Q
    ||||||||||  |||||||  || |||||||||| |||||||||||| |||||||||||    
T  42608157 ttagaccatctacaatggtgaaaaacattcaacaacattcaacatccgttttttcaatt 42608099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 219
Target Start/End: Original strand, 39008465 - 39008505
Alignment:
Q  179 ttcaacaccattcaacatccattttttcaattcccaacact 219  Q
    ||||| ||| ||||||||||| |||||||||||||||||||    
T  39008465 ttcaatacccttcaacatccactttttcaattcccaacact 39008505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 3e-19; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 152 - 216
Target Start/End: Original strand, 37888511 - 37888575
Alignment:
Q  152 ttagaccatccccaatggtttaagacattcaacaccattcaacatccattttttcaattcccaac 216  Q
    ||||||||||| |||||||| || |||||||||||||||||||||||| ||||||||||||||||    
T  37888511 ttagaccatcctcaatggttaaacacattcaacaccattcaacatccactttttcaattcccaac 37888575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 154 - 219
Target Start/End: Complemental strand, 22737706 - 22737641
Alignment:
Q  154 agaccatccccaatggtttaagacattcaacaccattcaacatccattttttcaattcccaacact 219  Q
    |||||||||||||||||| || | |||||||| ||||||||| ||| |||||||||||||||||||    
T  22737706 agaccatccccaatggttcaacatattcaacagcattcaacacccactttttcaattcccaacact 22737641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 219
Target Start/End: Original strand, 37887843 - 37887873
Alignment:
Q  189 ttcaacatccattttttcaattcccaacact 219  Q
    |||||||||||||||||||||||||||||||    
T  37887843 ttcaacatccattttttcaattcccaacact 37887873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 154 - 219
Target Start/End: Original strand, 22191182 - 22191246
Alignment:
Q  154 agaccatccccaatggtttaagacattcaacaccattcaacatccattttttcaattcccaacact 219  Q
    |||||||||| ||||||||    ||||||||||||||||||| ||| |||||||||| ||||||||    
T  22191182 agaccatccctaatggtttttaccattcaacaccattcaaca-ccactttttcaatttccaacact 22191246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 219
Target Start/End: Original strand, 26812099 - 26812139
Alignment:
Q  179 ttcaacaccattcaacatccattttttcaattcccaacact 219  Q
    ||||| ||| ||||||| |||||||||||||||||||||||    
T  26812099 ttcaatacccttcaacacccattttttcaattcccaacact 26812139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 155 - 219
Target Start/End: Complemental strand, 30648 - 30584
Alignment:
Q  155 gaccatccccaatggtttaagacattcaacaccattcaacatccattttttcaattcccaacact 219  Q
    ||||||||||||||||| ||  ||||||||||||||||||||||| ||||||||||| |||||||    
T  30648 gaccatccccaatggttaaacccattcaacaccattcaacatccactttttcaattctcaacact 30584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 152 - 214
Target Start/End: Complemental strand, 47750337 - 47750275
Alignment:
Q  152 ttagaccatccccaatggtttaagacattcaacaccattcaacatccattttttcaattccca 214  Q
    |||||| |||||||||||||||   ||||||||||||||||||||||| ||||||||||||||    
T  47750337 ttagacaatccccaatggtttataccattcaacaccattcaacatccactttttcaattccca 47750275  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 219
Target Start/End: Original strand, 35394877 - 35394942
Alignment:
Q  154 agaccatccccaatggtttaagacattcaacaccattcaacatccattttttcaattcccaacact 219  Q
    |||||||||||||| ||| || ||||||||||||||||||||  ||  ||||||||| ||||||||    
T  35394877 agaccatccccaatagttaaacacattcaacaccattcaacacacaccttttcaatttccaacact 35394942  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 219
Target Start/End: Complemental strand, 34199358 - 34199315
Alignment:
Q  176 acattcaacaccattcaacatccattttttcaattcccaacact 219  Q
    |||||||||| | ||||||||||| |||||||||||||||||||    
T  34199358 acattcaacaaccttcaacatccactttttcaattcccaacact 34199315  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 219
Target Start/End: Complemental strand, 13094476 - 13094436
Alignment:
Q  179 ttcaacaccattcaacatccattttttcaattcccaacact 219  Q
    ||||| ||| ||||||| |||||||||||||||||||||||    
T  13094476 ttcaatacccttcaacacccattttttcaattcccaacact 13094436  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 219
Target Start/End: Original strand, 41890497 - 41890561
Alignment:
Q  154 agaccatccccaatggtttaagacattcaacaccattcaacatccattttttcaattcccaacact 219  Q
    ||||||||| |||||||||    |||||||||||||||||||| || |||||||||||||||||||    
T  41890497 agaccatccacaatggttttcaccattcaacaccattcaacat-cactttttcaattcccaacact 41890561  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 219
Target Start/End: Complemental strand, 46573036 - 46572971
Alignment:
Q  154 agaccatccccaatggtttaagacattcaacaccattcaacatccattttttcaattcccaacact 219  Q
    ||||||||  |||||||  || |||||||||| ||||||||| ||| |||||||||||||||||||    
T  46573036 agaccatctacaatggtgaaaaacattcaacaacattcaacacccactttttcaattcccaacact 46572971  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 220
Target Start/End: Complemental strand, 25832836 - 25832769
Alignment:
Q  152 ttagaccatccccaatggtttaagacattcaacaccattcaacatccattttttcaattcccaacactt 220  Q
    |||||||||||  ||||||||    ||||||||||||||||||| ||| ||||||||||||||||||||    
T  25832836 ttagaccatccttaatggtttttaccattcaacaccattcaaca-ccactttttcaattcccaacactt 25832769  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 219
Target Start/End: Complemental strand, 35424087 - 35424055
Alignment:
Q  187 cattcaacatccattttttcaattcccaacact 219  Q
    |||||||||||||||||||||||||||||||||    
T  35424087 cattcaacatccattttttcaattcccaacact 35424055  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 219
Target Start/End: Original strand, 42601748 - 42601788
Alignment:
Q  179 ttcaacaccattcaacatccattttttcaattcccaacact 219  Q
    ||||||||||||||||| ||| |||||||||||||||||||    
T  42601748 ttcaacaccattcaacacccactttttcaattcccaacact 42601788  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 220
Target Start/End: Complemental strand, 36178791 - 36178749
Alignment:
Q  178 attcaacaccattcaacatccattttttcaattcccaacactt 220  Q
    |||||||||| ||||||| ||| ||||||||||||||||||||    
T  36178791 attcaacacccttcaacacccactttttcaattcccaacactt 36178749  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 178 - 219
Target Start/End: Original strand, 4045966 - 4046007
Alignment:
Q  178 attcaacaccattcaacatccattttttcaattcccaacact 219  Q
    |||||||| | ||||||||||| |||||||||||||||||||    
T  4045966 attcaacaaccttcaacatccactttttcaattcccaacact 4046007  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 178 - 219
Target Start/End: Complemental strand, 10426518 - 10426477
Alignment:
Q  178 attcaacaccattcaacatccattttttcaattcccaacact 219  Q
    |||||||| | ||||||| |||||||||||||||||||||||    
T  10426518 attcaacaaccttcaacacccattttttcaattcccaacact 10426477  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 178 - 219
Target Start/End: Complemental strand, 35472713 - 35472672
Alignment:
Q  178 attcaacaccattcaacatccattttttcaattcccaacact 219  Q
    |||||| ||| ||||||||||| |||||||||||||||||||    
T  35472713 attcaatacccttcaacatccactttttcaattcccaacact 35472672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 219
Target Start/End: Complemental strand, 26165640 - 26165600
Alignment:
Q  179 ttcaacaccattcaacatccattttttcaattcccaacact 219  Q
    ||||| ||| ||||||||||| |||||||||||||||||||    
T  26165640 ttcaatacccttcaacatccactttttcaattcccaacact 26165600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 219
Target Start/End: Complemental strand, 31170311 - 31170271
Alignment:
Q  179 ttcaacaccattcaacatccattttttcaattcccaacact 219  Q
    ||||| ||| ||||||| |||||||||||||||||||||||    
T  31170311 ttcaatacccttcaacacccattttttcaattcccaacact 31170271  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 219
Target Start/End: Original strand, 44651032 - 44651096
Alignment:
Q  154 agaccatccccaatggtttaagacattcaacaccattcaacatccattttttcaattcccaacact 219  Q
    |||||||||||||||||||    | ||||||||||||||||| ||| |||||||||||||||||||    
T  44651032 agaccatccccaatggtttttttctttcaacaccattcaaca-ccactttttcaattcccaacact 44651096  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 219
Target Start/End: Original strand, 41542313 - 41542353
Alignment:
Q  179 ttcaacaccattcaacatccattttttcaattcccaacact 219  Q
    ||||||| ||||||||||||| |||||||||||||||||||    
T  41542313 ttcaacatcattcaacatccactttttcaattcccaacact 41542353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 219
Target Start/End: Complemental strand, 3755117 - 3755074
Alignment:
Q  176 acattcaacaccattcaacatccattttttcaattcccaacact 219  Q
    ||||||||||||||||| |||||| ||||||||||| |||||||    
T  3755117 acattcaacaccattcagcatccactttttcaattctcaacact 3755074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 219
Target Start/End: Original strand, 44334270 - 44334312
Alignment:
Q  177 cattcaacaccattcaacatccattttttcaattcccaacact 219  Q
    ||||||| ||||||||||||||| ||||||||||| |||||||    
T  44334270 cattcaataccattcaacatccactttttcaattctcaacact 44334312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 182 - 219
Target Start/End: Original strand, 8464085 - 8464122
Alignment:
Q  182 aacaccattcaacatccattttttcaattcccaacact 219  Q
    |||||||||||||||||| ||||||||||| |||||||    
T  8464085 aacaccattcaacatccactttttcaattctcaacact 8464122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 219
Target Start/End: Original strand, 29523686 - 29523726
Alignment:
Q  179 ttcaacaccattcaacatccattttttcaattcccaacact 219  Q
    ||||||||| ||||||| ||| |||||||||||||||||||    
T  29523686 ttcaacacccttcaacacccactttttcaattcccaacact 29523726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 219
Target Start/End: Original strand, 124001 - 124041
Alignment:
Q  179 ttcaacaccattcaacatccattttttcaattcccaacact 219  Q
    ||||||||||||||||||||| |||||||||| ||||||||    
T  124001 ttcaacaccattcaacatccactttttcaatttccaacact 124041  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 219
Target Start/End: Original strand, 197795 - 197829
Alignment:
Q  185 accattcaacatccattttttcaattcccaacact 219  Q
    ||||||||||||||| |||||||||||||||||||    
T  197795 accattcaacatccactttttcaattcccaacact 197829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 219
Target Start/End: Complemental strand, 29428598 - 29428564
Alignment:
Q  185 accattcaacatccattttttcaattcccaacact 219  Q
    ||||||||||||||| |||||||||||||||||||    
T  29428598 accattcaacatccactttttcaattcccaacact 29428564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 220
Target Start/End: Original strand, 8669872 - 8669916
Alignment:
Q  176 acattcaacaccattcaacatccattttttcaattcccaacactt 220  Q
    |||||||||| | ||||||||||| |||||||||| |||||||||    
T  8669872 acattcaacaaccttcaacatccactttttcaatttccaacactt 8669916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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