View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2583R-Insertion-4 (Length: 225)
Name: NF2583R-Insertion-4
Description: NF2583R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2583R-Insertion-4 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 9 - 225
Target Start/End: Original strand, 7666341 - 7666557
Alignment:
| Q |
9 |
gcagggcactactttgtcaatgagttcagcataccaccctcaatccgatggtcaatcggaagcagttaacaagactttagaaatgtatttgaggtgcatt |
108 |
Q |
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| T |
7666341 |
gcagggcactactttgtcaatgagttcagcataccaccctcaatccgatggtcaatcggaagtagttaacaagactttagaaatgtatttgaggtgcatt |
7666440 |
T |
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| Q |
109 |
actgctgagaaaccaaagacttgggccaaagctttgaattgggcagagttttggtacaattcatcgcttcacactagcattggtatgataccattcaaag |
208 |
Q |
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| T |
7666441 |
actgctgagaaaccaaagacttgggccaaagctttgaattgggcagagttttggtacaattcatcgtttcacactagcattggtatgataccattcaaag |
7666540 |
T |
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| Q |
209 |
cagtgcatggcagagat |
225 |
Q |
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| T |
7666541 |
cagtgcatggcagagat |
7666557 |
T |
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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 104
Target Start/End: Original strand, 14311619 - 14311695
Alignment:
| Q |
28 |
atgagttcagcataccaccctcaatccgatggtcaatcggaagcagttaacaagactttagaaatgtatttgaggtg |
104 |
Q |
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| T |
14311619 |
atgagttcggcataccatcctcaatccaatggtcaatcagaggccgtaaataagattctcgaaatgtatttaaggtg |
14311695 |
T |
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