View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2583R-Insertion-7 (Length: 273)
Name: NF2583R-Insertion-7
Description: NF2583R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2583R-Insertion-7 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 14 - 273
Target Start/End: Original strand, 3014492 - 3014751
Alignment:
| Q |
14 |
agcgatgttgttgcgtaatatctgcttaattctttctattcatgtttttgtatttcgtatttcagtggtgaaggaatcccggacatgttatttctattgt |
113 |
Q |
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| T |
3014492 |
agcgttgttgtcgcgtaatatctgcttaattctttctattcatgtttttgtatttcatatttcagcggtgaaggaatcccggacatgttatttctattgt |
3014591 |
T |
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| Q |
114 |
ttaagtggactcaaaaaaccatgattcccaaatttacctacaatcatgaatatgtgcaggttagccttttttccactagttattattatagttcaatgtt |
213 |
Q |
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| T |
3014592 |
ttaagtggactcaaaaaaccatgattcccaaatttacctacaatcatgaatatgtgcaggttagccttttttcaactagttattattatagttcaatgtt |
3014691 |
T |
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| Q |
214 |
tctttgtcacagatctcatatcatatcttgttattgcagagtcttcgacctagtcgttta |
273 |
Q |
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| T |
3014692 |
tcttcgtcgcagatctcataacatatcttgttattgcagagtcttcgacctagtcgttta |
3014751 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 52 - 129
Target Start/End: Original strand, 183042 - 183119
Alignment:
| Q |
52 |
ttcatgtttttgtatttcgtatttcagtggtgaaggaatcccggacatgttatttctattgtttaagtggactcaaaa |
129 |
Q |
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| T |
183042 |
ttcatgttttagtatttgatatttcaatggtgaaggaatcccagacatgttatttctattgtttcagtggacccaaaa |
183119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 50 - 138
Target Start/End: Complemental strand, 591338 - 591250
Alignment:
| Q |
50 |
tattcatgtttttgtatttcgtatttcagtggtgaaggaatcccggacatgttatttctattgtttaagtggactcaaaaaaccatgat |
138 |
Q |
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| T |
591338 |
tattgatgttctagtatttgatatttcagtggtgaaggaatcacggacatgttatttctattgtttggttggacccaaaagaccatgat |
591250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 64 - 211
Target Start/End: Complemental strand, 40672172 - 40672025
Alignment:
| Q |
64 |
tatttcgtatttcagtggtgaaggaatcccggacatgttatttctattgtttaagtggactcaaaaaaccatgattcccaaatttacctacaatcatgaa |
163 |
Q |
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| T |
40672172 |
tatttcatatttcagtggtgaaggaatcccggatatgttatttctattgtttaagtggatccaatacaccattattcacaagtttacctacagtcaacaa |
40672073 |
T |
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| Q |
164 |
tatgtgcaggttagccttttttccactagttattattatagttcaatg |
211 |
Q |
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| T |
40672072 |
gctgtgcaggttagcccttttttccccacttattattattattcaatg |
40672025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 50 - 137
Target Start/End: Original strand, 44606401 - 44606488
Alignment:
| Q |
50 |
tattcatgtttttgtatttcgtatttcagtggtgaaggaatcccggacatgttatttctattgtttaagtggactcaaaaaaccatga |
137 |
Q |
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| T |
44606401 |
tattgatgttttagtatttaatatttcagtggtgaaggaatcccggatatgttattactattagttaagtggacccaaaagaccatga |
44606488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 50 - 137
Target Start/End: Original strand, 44627892 - 44627979
Alignment:
| Q |
50 |
tattcatgtttttgtatttcgtatttcagtggtgaaggaatcccggacatgttatttctattgtttaagtggactcaaaaaaccatga |
137 |
Q |
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| T |
44627892 |
tattgatgttttagtatttaatatttcagtggtgaaggaatcccggatatgttattactattagttcagtggacccaaaagaccatga |
44627979 |
T |
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