View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2583R-Insertion-8 (Length: 284)
Name: NF2583R-Insertion-8
Description: NF2583R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2583R-Insertion-8 |
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Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 37 - 281
Target Start/End: Complemental strand, 16599485 - 16599241
Alignment:
| Q |
37 |
tgtaattaatttcacaagcaactcattatcgacttaagtctttgtaacatgatttgagaaatcgacttttttgtcatatgtagccatgttataatatcct |
136 |
Q |
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| T |
16599485 |
tgtaattaatttcacaagcaactcattatcgacttaagtctttgtaatatgatgtgagaaatcgacttttttgtcatatgtagccatgttgtaatatcct |
16599386 |
T |
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| Q |
137 |
gatcgttcaactttgatgaagaaaagcaagacatttgcaactcctagtgcagttttcatcctacataagatataattttgcaaagagagcataaagaatg |
236 |
Q |
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|||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |
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| T |
16599385 |
gatcgttcaactatgatgaagaaaagcaagacatttacagctcctagtgcagttttcatcctacataagatataattttgcagagagagcataaaaaatg |
16599286 |
T |
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| Q |
237 |
gatataattcaaatatagtagaaatctattgtaaatttaaatatc |
281 |
Q |
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| T |
16599285 |
gatataattcaaatatagtagaaatctattgtaaatttcaatatc |
16599241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 48 - 261
Target Start/End: Original strand, 25623912 - 25624120
Alignment:
| Q |
48 |
tcacaagcaactcattatcgacttaagtctttgtaacatgatttgagaaatcgacttttttgtcatatgtagccatgttataatatcctgatcgttcaac |
147 |
Q |
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||||||||||||||||||||||| ||||||| |||||||||| ||| | ||||| ||| ||||| | || ||||||| | |||| || ||||| | |
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| T |
25623912 |
tcacaagcaactcattatcgactcaagtcttagtaacatgatgtga-atatcgagtttc--gtcatgtctaatcatgttaga---tcctaatagttcagc |
25624005 |
T |
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| Q |
148 |
tt--tgatgaagaaaagcaagacatttgcaactcctagtgcagttttcatcctacataagatataattttgcaaa-gagagcataaagaatggatataat |
244 |
Q |
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|| ||||||||||| ||||||| |||||| ||||| || |||||||||||||||||||||| ||||||||||| |||| ||| || ||| |||||||| |
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| T |
25624006 |
ttcttgatgaagaaa-gcaagacctttgcagctccttgtatagttttcatcctacataagataaaattttgcaaatgagaacatcaa-aatagatataat |
25624103 |
T |
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| Q |
245 |
tcaaatatagtagaaat |
261 |
Q |
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||||||| ||||||||| |
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| T |
25624104 |
tcaaatacagtagaaat |
25624120 |
T |
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