View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2583R-Insertion-9 (Length: 400)

Name: NF2583R-Insertion-9
Description: NF2583R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2583R-Insertion-9
NF2583R-Insertion-9
[»] scaffold0002 (1 HSPs)
scaffold0002 (13-399)||(343203-343591)


Alignment Details
Target: scaffold0002 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 13 - 399
Target Start/End: Original strand, 343203 - 343591
Alignment:
Q  13 ggagatgccaccacggttggtggttgtgtcgtgaccggtgttattgccgtcggggttgtaggtggcaactttgttggtgcagttgctggtgcttggacgt 112  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  343203 ggagatgccaccacggtaggtggttgtgtcgtgaccggtgttattgccgtcggggttgtaggtggcaactttgttggtgcagttgctggtgcttgggcgt 343302  T
Q  113 tgaatcctagcaggcaactgaggcttagtaaagtcataacccagaacattgtagccattgttgtgtgtaaattgttttgttagagacaa--gagaaaatt 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |   |||||||||    
T  343303 tgaatcctagcaggcaactgaggcttagtaaagtcataacccagaacattgtagccattgttgtgtgtgaattgttttgttagagagagacgagaaaatt 343402  T
Q  211 tgtttcttatttattggctatattgtcaagcagatgggtagaaacgtatgtagtggattatctgtggaaggaggaaagtcgccttcatttgattgtgaca 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  343403 tgtttcttatttattggctatattgtcaagcagatgggtagaaacgtatgcagtggatcatctgtggaaggaggaaagtagccttcatttgattgtgaca 343502  T
Q  311 ttattcattgtcattgatcatctaacaaggaacgttagctaatggaaaatgtgtaggtaacctagcttcgtaaaatcagtggtctttag 399  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  343503 ttattcattgtcattgatcatctaacaaggaacgttagctaatggaaaatgtgtaggtaacctagcttcgtaaaatcaatggtctttag 343591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University