View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2583_high_1 (Length: 745)
Name: NF2583_high_1
Description: NF2583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2583_high_1 |
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| [»] scaffold0912 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 435; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 280 - 733
Target Start/End: Complemental strand, 6080662 - 6080211
Alignment:
| Q |
280 |
attatgaagatttgcagagtgaaaaacaaaggaacaatgatgactcacattaaggcatttaatcaaacaggtttagtgtacgcagcgaaatagggaaata |
379 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6080662 |
attatgaagatttgcagagtgaaaaacaaaggaacaatgatgactaacattaaggcatttaatcaaacaggtttagtgtacgcagcgaaatagggaaata |
6080563 |
T |
|
| Q |
380 |
ttgagttcaaattcctctgatttcaaaaaagtagaacaaattcaaaacgaaaagggttacttagattatgcagattagaatattgataaaccctttatca |
479 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6080562 |
ttgagttcaaattcctctgatttcaaaa--gtagaacaaattcaaaacgaaaagggttacttagattatgcagattagaatattgataaaccctttatca |
6080465 |
T |
|
| Q |
480 |
ctatttacttggcgtcgcaaatgaacataatacgattagtttaagggattggatttgggaaaatttgttgacaataagatgcttaagaataaaagccgta |
579 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6080464 |
ctatttacttggcgtcgcaaatgaacataatacgattagtttaagggattggatttgggaaaatttgttgacaataagatgcttaagaataaaagccgta |
6080365 |
T |
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| Q |
580 |
cctcaacggtgatcggagaagcttggtggcggtaagggcgacggggctaagcgttggaaacactatcacacagttcacaacatgtgcatttcttttttaa |
679 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6080364 |
cctcaacggtgatcggagaagcttggtggcggtaagggcgacggggctaagcgttggaaacactatcacacagttcacaacatgtgcatttcttttttaa |
6080265 |
T |
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| Q |
680 |
cttttgggtttaaatttgtgttaattttgtatgatgatgaagataatattttga |
733 |
Q |
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| T |
6080264 |
cttttgggtttaaatttgtgttaattttgtatcatgatgaagataatattttga |
6080211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 5 - 131
Target Start/End: Complemental strand, 6080791 - 6080664
Alignment:
| Q |
5 |
gaacaaagaacccataaaaaatcctacaaactcatttgaaaacatatgctcaatgagttct-nnnnnnncaaggatataaacccaaatttaaacccaaaa |
103 |
Q |
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| T |
6080791 |
gaacaaagaacccataaaaaatcctacaaactcatttgaaaacatatgctcaatgagttctaaaaaaaacaaggatataaacccaaatttaaacccaaaa |
6080692 |
T |
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| Q |
104 |
cttaaacacataaatattgaatttttag |
131 |
Q |
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| T |
6080691 |
cttaaacacataaatattgaatttttag |
6080664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 146 - 208
Target Start/End: Original strand, 35011555 - 35011617
Alignment:
| Q |
146 |
ataagatcatgaaaagaaaaactgtaatgatttaaacagaatgtgaaattaaaaaagcgaggt |
208 |
Q |
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| T |
35011555 |
ataagatcatgaaaacaaaaactgtaatgatttaaacataatgtataattaaaaaagcgaggt |
35011617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 544 - 602
Target Start/End: Original strand, 35011869 - 35011927
Alignment:
| Q |
544 |
ttgttgacaataagatgcttaagaataaaagccgtacctcaacggtgatcggagaagct |
602 |
Q |
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| T |
35011869 |
ttgttgagaatgagatgcttaggattaaaagccgtacctcaacggtggtcggagaagct |
35011927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 681 - 719
Target Start/End: Complemental strand, 18371855 - 18371817
Alignment:
| Q |
681 |
ttttgggtttaaatttgtgttaattttgtatgatgatga |
719 |
Q |
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| T |
18371855 |
ttttgggtttaaatttgtgttaatgttggatgatgatga |
18371817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 686 - 731
Target Start/End: Original strand, 56338226 - 56338271
Alignment:
| Q |
686 |
ggtttaaatttgtgttaattttgtatgatgatgaagataatatttt |
731 |
Q |
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| T |
56338226 |
ggtttaaatttgtgttaattttatatgatgatgaagataatatttt |
56338271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 686 - 722
Target Start/End: Complemental strand, 2274432 - 2274396
Alignment:
| Q |
686 |
ggtttaaatttgtgttaattttgtatgatgatgaaga |
722 |
Q |
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| T |
2274432 |
ggtttaaatttgtgttaattttggatgatgatgaaga |
2274396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 675 - 728
Target Start/End: Original strand, 6133509 - 6133562
Alignment:
| Q |
675 |
tttaacttttgggtttaaatttgtgttaattttgtatgatgatgaagataatat |
728 |
Q |
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| T |
6133509 |
tttaagttttgggtttatatttgagttaattttggatgatgatgaagataatat |
6133562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 675 - 728
Target Start/End: Complemental strand, 26379700 - 26379647
Alignment:
| Q |
675 |
tttaacttttgggtttaaatttgtgttaattttgtatgatgatgaagataatat |
728 |
Q |
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| T |
26379700 |
tttaagttttgggtttatacttgagttaattttggatgatgatgaagataatat |
26379647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0912 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0912
Description:
Target: scaffold0912; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 675 - 732
Target Start/End: Complemental strand, 1908 - 1854
Alignment:
| Q |
675 |
tttaacttttgggtttaaatttgtgttaattttgtatgatgatgaagataatattttg |
732 |
Q |
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| T |
1908 |
tttaagttttgagtttaaatttgtgttaattttg---gatgatgaagaaaatattttg |
1854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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