View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2583_low_5 (Length: 260)
Name: NF2583_low_5
Description: NF2583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2583_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 98; Significance: 2e-48; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 115 - 244
Target Start/End: Original strand, 24543928 - 24544056
Alignment:
| Q |
115 |
aagcatatcatttaaaatgggaaactgaatcagctatcttatagggatgaataactataattcttatactataaaattaaaattaatatcaaaggaaccg |
214 |
Q |
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| T |
24543928 |
aagcatatcatttaaa-tgggaaactgaatgagctatcttatagggatggataactataattgttataccataaaattaaaattaatatcaaaagaaccg |
24544026 |
T |
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| Q |
215 |
tgtgttagtaacctattaatgtgtagtttg |
244 |
Q |
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| T |
24544027 |
tgtgttagttacctattaatgtgtagtttg |
24544056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 13 - 116
Target Start/End: Original strand, 24543599 - 24543711
Alignment:
| Q |
13 |
aatatgagaaagaaataaaactatcaaaatggaatacactacat---------ggaatagaccaaacaattcaaacaccaaactttcacaaggataaaaa |
103 |
Q |
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| T |
24543599 |
aatatgagaaagaaataaaactatcaaaatggaatacactacatagttcagatggaatagaccgaacaattcaaacaccaaactttcacaagtataaaaa |
24543698 |
T |
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| Q |
104 |
aggatgaatgtaa |
116 |
Q |
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| T |
24543699 |
aggatgaatgtaa |
24543711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 14 - 111
Target Start/End: Original strand, 24550233 - 24550339
Alignment:
| Q |
14 |
atatgagaaagaaataaaactatcaaaatggaatacactaca---------tggaatagaccaaacaattcaaacaccaaactttcacaaggataaaaaa |
104 |
Q |
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| T |
24550233 |
atatgagaaagaaataaaactatcaaaatggaatacactacacagttcagatggaatagaccaaacaattcaaacaccaaactctcacaaggataaaaaa |
24550332 |
T |
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| Q |
105 |
ggatgaa |
111 |
Q |
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| T |
24550333 |
ggatgaa |
24550339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 13 - 111
Target Start/End: Original strand, 24546478 - 24546585
Alignment:
| Q |
13 |
aatatgagaaagaaataaaactatcaaaatggaatacactaca---------tggaatagaccaaacaattcaaacaccaaactttcacaaggataaaaa |
103 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||| |||||| ||||||||||||||||||||||||| ||||||||||||||| |
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| T |
24546478 |
aatatgagaaagaaataaaactatcaaaatagaatacactacacagttcagatggaatcgaccaaacaattcaaacaccaaactctcacaaggataaaaa |
24546577 |
T |
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| Q |
104 |
aggatgaa |
111 |
Q |
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|||||||| |
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| T |
24546578 |
aggatgaa |
24546585 |
T |
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