View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2583_low_8 (Length: 232)

Name: NF2583_low_8
Description: NF2583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2583_low_8
NF2583_low_8
[»] chr2 (6 HSPs)
chr2 (107-198)||(13049163-13049253)
chr2 (26-103)||(15562294-15562371)
chr2 (26-103)||(12918623-12918700)
chr2 (26-103)||(39819153-39819230)
chr2 (72-107)||(7755463-7755498)
chr2 (37-94)||(9402263-9402321)
[»] chr6 (3 HSPs)
chr6 (26-103)||(11448147-11448224)
chr6 (26-104)||(2543734-2543812)
chr6 (67-103)||(369542-369578)
[»] chr1 (10 HSPs)
chr1 (26-103)||(9379908-9379985)
chr1 (30-105)||(28739302-28739377)
chr1 (26-108)||(50754814-50754896)
chr1 (27-104)||(28045410-28045487)
chr1 (43-109)||(44381902-44381969)
chr1 (26-104)||(9884931-9885009)
chr1 (36-81)||(35251189-35251234)
chr1 (26-89)||(6539559-6539627)
chr1 (36-90)||(49200058-49200113)
chr1 (26-70)||(15928097-15928141)
[»] chr7 (3 HSPs)
chr7 (26-101)||(17272789-17272864)
chr7 (43-103)||(43500088-43500148)
chr7 (26-78)||(29681854-29681906)
[»] chr3 (6 HSPs)
chr3 (26-104)||(22893890-22893968)
chr3 (28-104)||(11512479-11512555)
chr3 (26-69)||(20286994-20287037)
chr3 (26-69)||(31342097-31342140)
chr3 (63-103)||(25790901-25790941)
chr3 (45-96)||(29081596-29081648)
[»] chr5 (8 HSPs)
chr5 (26-103)||(5215560-5215637)
chr5 (26-87)||(19417535-19417595)
chr5 (26-76)||(29385303-29385353)
chr5 (26-103)||(36568794-36568871)
chr5 (27-76)||(9177863-9177912)
chr5 (66-103)||(41288004-41288041)
chr5 (30-97)||(9904165-9904233)
chr5 (27-75)||(25879328-25879376)
[»] chr4 (9 HSPs)
chr4 (26-87)||(6608439-6608500)
chr4 (26-103)||(31846782-31846859)
chr4 (26-103)||(31012217-31012294)
chr4 (26-90)||(2254622-2254686)
chr4 (45-94)||(46321444-46321494)
chr4 (26-69)||(6607420-6607463)
chr4 (36-90)||(32008336-32008391)
chr4 (45-90)||(31012130-31012176)
chr4 (45-90)||(31846900-31846946)
[»] chr8 (2 HSPs)
chr8 (26-106)||(43465176-43465259)
chr8 (45-105)||(16687510-16687571)


Alignment Details
Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 107 - 198
Target Start/End: Complemental strand, 13049253 - 13049163
Alignment:
Q  107 atggtcatacatgcacagccaggtgagctggcttgctcccaaaaccttaggttgctataatttgcaaatgcaataaatttaacattcacagt 198  Q
    |||||||||||||||||  ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||    
T  13049253 atggtcatacatgcacaaacaggtgagctggcttactcccaaaaccttaggttgctataatttgcaaaagcaataaa-ttaacattcacagt 13049163  T

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Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 26 - 103
Target Start/End: Original strand, 15562294 - 15562371
Alignment:
Q  26 gttgttttgcacacttataacattgtggttggtaatatcaccaatatcaccaaccacaatgtcactcaaatattatcc 103  Q
    |||||||||||||||| |||||||||| |||||||| ||||||||||||||||||| |||||||| ||||||||||||    
T  15562294 gttgttttgcacacttgtaacattgtgattggtaatgtcaccaatatcaccaaccataatgtcacccaaatattatcc 15562371  T

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Target: chr2; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 26 - 103
Target Start/End: Original strand, 12918623 - 12918700
Alignment:
Q  26 gttgttttgcacacttataacattgtggttggtaatatcaccaatatcaccaaccacaatgtcactcaaatattatcc 103  Q
    ||||||||||||| || ||||||||||||||||||| |||||||| ||||||||||||||||||| ||| ||||||||    
T  12918623 gttgttttgcacatttgtaacattgtggttggtaatgtcaccaatgtcaccaaccacaatgtcacccaagtattatcc 12918700  T

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Target: chr2; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 26 - 103
Target Start/End: Original strand, 39819153 - 39819230
Alignment:
Q  26 gttgttttgcacacttataacattgtggttggtaatatcaccaatatcaccaaccacaatgtcactcaaatattatcc 103  Q
    |||||||||||||||| ||| ||||||||||||||| |||||||| ||||||||||||||||||| ||| ||||||||    
T  39819153 gttgttttgcacacttgtaatattgtggttggtaatgtcaccaatgtcaccaaccacaatgtcacccaagtattatcc 39819230  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 107
Target Start/End: Original strand, 7755463 - 7755498
Alignment:
Q  72 tcaccaaccacaatgtcactcaaatattatcccata 107  Q
    ||||||||||||||||||| ||||||||||||||||    
T  7755463 tcaccaaccacaatgtcacccaaatattatcccata 7755498  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 94
Target Start/End: Original strand, 9402263 - 9402321
Alignment:
Q  37 cacttataacattgtggttggt-aatatcaccaatatcaccaaccacaatgtcactcaa 94  Q
    ||||||||||||| ||||| || ||| ||| ||||||||| ||||||||||||||||||    
T  9402263 cacttataacattatggttagtcaatgtcatcaatatcacaaaccacaatgtcactcaa 9402321  T

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Target: chr6 (Bit Score: 66; Significance: 3e-29; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 26 - 103
Target Start/End: Original strand, 11448147 - 11448224
Alignment:
Q  26 gttgttttgcacacttataacattgtggttggtaatatcaccaatatcaccaaccacaatgtcactcaaatattatcc 103  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||    
T  11448147 gttgttttgcacacttataacattgtggttggtaatgtcaccaatatcaccaaccacaatgtcacccaagtattatcc 11448224  T

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Target: chr6; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 26 - 104
Target Start/End: Complemental strand, 2543812 - 2543734
Alignment:
Q  26 gttgttttgcacacttataacattgtggttggtaatatcaccaatatcaccaaccacaatgtcactcaaatattatccc 104  Q
    |||||||| ||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||| ||| |||||||||    
T  2543812 gttgttttacacacttgtaacattgtggttggtaatgtcaccaatgtcaccaaccacaatgtcacccaagtattatccc 2543734  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 103
Target Start/End: Original strand, 369542 - 369578
Alignment:
Q  67 caatatcaccaaccacaatgtcactcaaatattatcc 103  Q
    |||| ||||||||||||||||||||||| ||||||||    
T  369542 caatgtcaccaaccacaatgtcactcaagtattatcc 369578  T

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Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 26 - 103
Target Start/End: Original strand, 9379908 - 9379985
Alignment:
Q  26 gttgttttgcacacttataacattgtggttggtaatatcaccaatatcaccaaccacaatgtcactcaaatattatcc 103  Q
    |||||||||||||||| ||||||||||||||||||| | |||||| ||||||||||||||||||| ||||||||||||    
T  9379908 gttgttttgcacacttgtaacattgtggttggtaatgttaccaatgtcaccaaccacaatgtcacccaaatattatcc 9379985  T

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Target: chr1; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 30 - 105
Target Start/End: Complemental strand, 28739377 - 28739302
Alignment:
Q  30 ttttgcacacttataacattgtggttggtaatatcaccaatatcaccaaccacaatgtcactcaaatattatccca 105  Q
    |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||| ||| ||||||||||    
T  28739377 ttttgcacacttgtaacattgtggttggtaatgtcaccaatatcaccaaccacaatatcacccaagtattatccca 28739302  T

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Target: chr1; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 26 - 108
Target Start/End: Original strand, 50754814 - 50754896
Alignment:
Q  26 gttgttttgcacacttataacattgtggttggtaatatcaccaatatcaccaaccacaatgtcactcaaatattatcccatat 108  Q
    |||||||||||||||| |||||||||||||| |||| |||||||| ||||||||||||||||||| ||| |||||||| ||||    
T  50754814 gttgttttgcacacttgtaacattgtggttgataatgtcaccaatgtcaccaaccacaatgtcacccaagtattatccaatat 50754896  T

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Target: chr1; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 27 - 104
Target Start/End: Original strand, 28045410 - 28045487
Alignment:
Q  27 ttgttttgcacacttataacattgtggttggtaatatcaccaatatcaccaaccacaatgtcactcaaatattatccc 104  Q
    |||||||| |||||| ||||||||||||||||||| |||||||| ||||||||||||||||||| ||| |||||||||    
T  28045410 ttgttttgtacacttgtaacattgtggttggtaatgtcaccaatgtcaccaaccacaatgtcacccaagtattatccc 28045487  T

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Target: chr1; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 43 - 109
Target Start/End: Complemental strand, 44381969 - 44381902
Alignment:
Q  43 taacattgtggttggt-aatatcaccaatatcaccaaccacaatgtcactcaaatattatcccatatg 109  Q
    |||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||||| ||||    
T  44381969 taacattgtggttggtcaatgtcaccaatatcaccaaccacaatgtcacccaaatattatcccttatg 44381902  T

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Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 26 - 104
Target Start/End: Original strand, 9884931 - 9885009
Alignment:
Q  26 gttgttttgcacacttataacattgtggttggtaatatcaccaatatcaccaaccacaatgtcactcaaatattatccc 104  Q
    |||||||||||||||| |||||||||||||| |||| |||| ||| |||||||||||||| |||| ||| ||| |||||    
T  9884931 gttgttttgcacacttgtaacattgtggttgataatgtcacgaatgtcaccaaccacaatatcacccaagtatcatccc 9885009  T

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Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 81
Target Start/End: Complemental strand, 35251234 - 35251189
Alignment:
Q  36 acacttataacattgtggttggtaatatcaccaatatcaccaacca 81  Q
    |||||| ||||||||||||||||||| |||||||||||||||||||    
T  35251234 acacttgtaacattgtggttggtaatgtcaccaatatcaccaacca 35251189  T

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Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 26 - 89
Target Start/End: Complemental strand, 6539627 - 6539559
Alignment:
Q  26 gttgttttgcacacttataacattgtggttggta-----atatcaccaatatcaccaaccacaatgtca 89  Q
    |||||||||||||||| |||||||||||||||||     ||||||||||| | ||||||||||||||||    
T  6539627 gttgttttgcacacttgtaacattgtggttggtaacatcatatcaccaatgttaccaaccacaatgtca 6539559  T

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Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 90
Target Start/End: Original strand, 49200058 - 49200113
Alignment:
Q  36 acacttataacattgtggttggt-aatatcaccaatatcaccaaccacaatgtcac 90  Q
    |||||| | |||||||||||||| ||| ||| ||||||||||||||||||||||||    
T  49200058 acacttgtgacattgtggttggtcaatgtcatcaatatcaccaaccacaatgtcac 49200113  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 70
Target Start/End: Complemental strand, 15928141 - 15928097
Alignment:
Q  26 gttgttttgcacacttataacattgtggttggtaatatcaccaat 70  Q
    ||||||||| |||||| |||||||||||||| |||| ||||||||    
T  15928141 gttgttttgtacacttgtaacattgtggttgataatgtcaccaat 15928097  T

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Target: chr7 (Bit Score: 56; Significance: 2e-23; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 26 - 101
Target Start/End: Original strand, 17272789 - 17272864
Alignment:
Q  26 gttgttttgcacacttataacattgtggttggtaatatcaccaatatcaccaaccacaatgtcactcaaatattat 101  Q
    |||||||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||| ||| ||||||    
T  17272789 gttgttttgcacacttgtaacattgtggttggtaatgtcaccaatgtcaccaaccacaatgtcacccaagtattat 17272864  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 43 - 103
Target Start/End: Original strand, 43500088 - 43500148
Alignment:
Q  43 taacattgtggttggtaatatcaccaatatcaccaaccacaatgtcactcaaatattatcc 103  Q
    ||||||||||||||||||| ||||||||||||||||||||||| || | ||||||||||||    
T  43500088 taacattgtggttggtaatgtcaccaatatcaccaaccacaatatcgcccaaatattatcc 43500148  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 26 - 78
Target Start/End: Original strand, 29681854 - 29681906
Alignment:
Q  26 gttgttttgcacacttataacattgtggttggtaatatcaccaatatcaccaa 78  Q
    |||||||| ||||||| ||||||||||||||||||| |||||||| |||||||    
T  29681854 gttgttttacacacttgtaacattgtggttggtaatgtcaccaatgtcaccaa 29681906  T

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Target: chr3 (Bit Score: 55; Significance: 9e-23; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 26 - 104
Target Start/End: Complemental strand, 22893968 - 22893890
Alignment:
Q  26 gttgttttgcacacttataacattgtggttggtaatatcaccaatatcaccaaccacaatgtcactcaaatattatccc 104  Q
    ||||||||| |||||| ||||||||||||||||||| |||||||| ||||||||||||||||||| ||| |||||||||    
T  22893968 gttgttttgtacacttgtaacattgtggttggtaatgtcaccaatgtcaccaaccacaatgtcacccaagtattatccc 22893890  T

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Target: chr3; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 28 - 104
Target Start/End: Original strand, 11512479 - 11512555
Alignment:
Q  28 tgttttgcacacttataacattgtggttggtaatatcaccaatatcaccaaccacaatgtcactcaaatattatccc 104  Q
    |||||||||||||| ||||||||||||||||||| |||||||| |||||||||| |||||||| ||| |||||||||    
T  11512479 tgttttgcacacttgtaacattgtggttggtaatgtcaccaatgtcaccaaccataatgtcacccaagtattatccc 11512555  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 69
Target Start/End: Original strand, 20286994 - 20287037
Alignment:
Q  26 gttgttttgcacacttataacattgtggttggtaatatcaccaa 69  Q
    |||||||||||||||| ||||||||||||||||||| |||||||    
T  20286994 gttgttttgcacacttgtaacattgtggttggtaatgtcaccaa 20287037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 69
Target Start/End: Original strand, 31342097 - 31342140
Alignment:
Q  26 gttgttttgcacacttataacattgtggttggtaatatcaccaa 69  Q
    |||||||||||||||| ||||||||||||||||||| |||||||    
T  31342097 gttgttttgcacacttgtaacattgtggttggtaatgtcaccaa 31342140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 103
Target Start/End: Original strand, 25790901 - 25790941
Alignment:
Q  63 tcaccaatatcaccaaccacaatgtcactcaaatattatcc 103  Q
    |||||||| |||||||||| |||||||| ||||||||||||    
T  25790901 tcaccaatgtcaccaaccataatgtcacccaaatattatcc 25790941  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 96
Target Start/End: Complemental strand, 29081648 - 29081596
Alignment:
Q  45 acattgtggttggt-aatatcaccaatatcaccaaccacaatgtcactcaaat 96  Q
    |||||||||||||| ||| ||||| || ||||||||||||||||||| |||||    
T  29081648 acattgtggttggtcaatgtcaccgatgtcaccaaccacaatgtcacccaaat 29081596  T

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Target: chr5 (Bit Score: 50; Significance: 9e-20; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 26 - 103
Target Start/End: Complemental strand, 5215637 - 5215560
Alignment:
Q  26 gttgttttgcacacttataacattgtggttggtaatatcaccaatatcaccaaccacaatgtcactcaaatattatcc 103  Q
    ||||||||| |||||| ||||||||||||||||||| |||||||| | ||||||||||||||||| ||| ||||||||    
T  5215637 gttgttttgtacacttgtaacattgtggttggtaatgtcaccaatgttaccaaccacaatgtcacccaagtattatcc 5215560  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 26 - 87
Target Start/End: Original strand, 19417535 - 19417595
Alignment:
Q  26 gttgttttgcacacttataacattgtggttggtaatatcaccaatatcaccaaccacaatgt 87  Q
    ||||||||||||||||  |||||||||||||||||| |||||||| ||||||||||||||||    
T  19417535 gttgttttgcacacttg-aacattgtggttggtaatgtcaccaatgtcaccaaccacaatgt 19417595  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 26 - 76
Target Start/End: Complemental strand, 29385353 - 29385303
Alignment:
Q  26 gttgttttgcacacttataacattgtggttggtaatatcaccaatatcacc 76  Q
    |||||||||||||||| |||||||||||||||||||||||| ||| |||||    
T  29385353 gttgttttgcacacttgtaacattgtggttggtaatatcactaatgtcacc 29385303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 103
Target Start/End: Original strand, 36568794 - 36568871
Alignment:
Q  26 gttgttttgcacacttataacattgtggttggtaatatcaccaatatcaccaaccacaatgtcactcaaatattatcc 103  Q
    ||||||||| |||||| |||||||||||||| | || |||| ||| |||||||||||||||||||  || ||||||||    
T  36568794 gttgttttgtacacttgtaacattgtggttgattatgtcactaatgtcaccaaccacaatgtcacataagtattatcc 36568871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 76
Target Start/End: Complemental strand, 9177912 - 9177863
Alignment:
Q  27 ttgttttgcacacttataacattgtggttggtaatatcaccaatatcacc 76  Q
    ||||||||||||||||||||||||||||||||| | ||| |||| |||||    
T  9177912 ttgttttgcacacttataacattgtggttggtagtgtcatcaatgtcacc 9177863  T

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Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 66 - 103
Target Start/End: Original strand, 41288004 - 41288041
Alignment:
Q  66 ccaatatcaccaaccacaatgtcactcaaatattatcc 103  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  41288004 ccaatatcaccaaccacaatgtcacccaaatattatcc 41288041  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 97
Target Start/End: Complemental strand, 9904233 - 9904165
Alignment:
Q  30 ttttgcacacttataacattgtggttggt-aatatcaccaatatcaccaaccacaatgtcactcaaata 97  Q
    ||||| |||||| |||||||||||||| | ||||| |||||| ||| |||||| |||||||| ||||||    
T  9904233 ttttgtacacttgtaacattgtggttgatcaatattaccaatgtcaacaaccataatgtcacccaaata 9904165  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 75
Target Start/End: Complemental strand, 25879376 - 25879328
Alignment:
Q  27 ttgttttgcacacttataacattgtggttggtaatatcaccaatatcac 75  Q
    |||||||  |||||| |||||||||||||| |||| |||||||||||||    
T  25879376 ttgttttatacacttgtaacattgtggttgataatgtcaccaatatcac 25879328  T

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Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 26 - 87
Target Start/End: Original strand, 6608439 - 6608500
Alignment:
Q  26 gttgttttgcacacttataacattgtggttggtaatatcaccaatatcaccaaccacaatgt 87  Q
    ||||||||||| |||| ||||||||||||||||||| |||||||| ||||||||||||||||    
T  6608439 gttgttttgcagacttgtaacattgtggttggtaatgtcaccaatgtcaccaaccacaatgt 6608500  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 26 - 103
Target Start/End: Complemental strand, 31846859 - 31846782
Alignment:
Q  26 gttgttttgcacacttataacattgtggttggtaatatcaccaatatcaccaaccacaatgtcactcaaatattatcc 103  Q
    |||||||||||||||| ||||||| ||||||||||| |||| ||| |||||||||| |||||||| ||| ||||||||    
T  31846859 gttgttttgcacacttgtaacattttggttggtaatgtcacgaatgtcaccaaccataatgtcacccaagtattatcc 31846782  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 26 - 103
Target Start/End: Original strand, 31012217 - 31012294
Alignment:
Q  26 gttgttttgcacacttataacattgtggttggtaatatcaccaatatcaccaaccacaatgtcactcaaatattatcc 103  Q
    ||||||||||| |||| ||| ||||||||||||||| |||| ||| |||||||||||||||||||  || ||||||||    
T  31012217 gttgttttgcatacttgtaatattgtggttggtaatgtcactaatgtcaccaaccacaatgtcacctaagtattatcc 31012294  T

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Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 2254622 - 2254686
Alignment:
Q  26 gttgttttgcacacttataacattgtggttggtaatatcaccaatatcaccaaccacaatgtcac 90  Q
    ||||||||| |||||| |||||||||| |||||||||||| |||| |||| ||||||||||||||    
T  2254622 gttgttttgtacacttgtaacattgtgattggtaatatcatcaatgtcacgaaccacaatgtcac 2254686  T

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Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 45 - 94
Target Start/End: Original strand, 46321444 - 46321494
Alignment:
Q  45 acattgtggttggt-aatatcaccaatatcaccaaccacaatgtcactcaa 94  Q
    |||||||||||||| ||| ||||||||||||||||||||||||||||||||    
T  46321444 acattgtggttggtcaatgtcaccaatatcaccaaccacaatgtcactcaa 46321494  T

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Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 69
Target Start/End: Complemental strand, 6607463 - 6607420
Alignment:
Q  26 gttgttttgcacacttataacattgtggttggtaatatcaccaa 69  Q
    |||||||||||||||| ||||||||||||||||||| |||||||    
T  6607463 gttgttttgcacacttgtaacattgtggttggtaatgtcaccaa 6607420  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 90
Target Start/End: Original strand, 32008336 - 32008391
Alignment:
Q  36 acacttataacattgtggttggt-aatatcaccaatatcaccaaccacaatgtcac 90  Q
    |||||| ||||||| |||||||| |||||||| ||| |||||||||||||||||||    
T  32008336 acacttgtaacattttggttggtcaatatcactaatgtcaccaaccacaatgtcac 32008391  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 90
Target Start/End: Complemental strand, 31012176 - 31012130
Alignment:
Q  45 acattgtggttggt-aatatcaccaatatcaccaaccacaatgtcac 90  Q
    |||||||||||||| ||| |||||| |||||||||||||||||||||    
T  31012176 acattgtggttggtcaatgtcaccattatcaccaaccacaatgtcac 31012130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 90
Target Start/End: Original strand, 31846900 - 31846946
Alignment:
Q  45 acattgtggttggt-aatatcaccaatatcaccaaccacaatgtcac 90  Q
    |||||||||||||  |||||||||||| |||||||||||||||||||    
T  31846900 acattgtggttggccaatatcaccaatgtcaccaaccacaatgtcac 31846946  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 26 - 106
Target Start/End: Original strand, 43465176 - 43465259
Alignment:
Q  26 gttgttttgcacacttataacattgtgg---ttggtaatatcaccaatatcaccaaccacaatgtcactcaaatattatcccat 106  Q
    |||||||||||||||| |||||||||||   |||||||| |||||||| |||||||||| |||||||  ||| |||||||||||    
T  43465176 gttgttttgcacacttgtaacattgtggtggttggtaatttcaccaatgtcaccaaccagaatgtcatccaagtattatcccat 43465259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 105
Target Start/End: Complemental strand, 16687571 - 16687510
Alignment:
Q  45 acattgtggttgg-taatatcaccaatatcaccaaccacaatgtcactcaaatattatccca 105  Q
    ||||||||||| | |||| |||||||||||||||||||||||||||  ||| ||||||||||    
T  16687571 acattgtggttagctaatgtcaccaatatcaccaaccacaatgtcatccaagtattatccca 16687510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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