View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2584_high_12 (Length: 281)
Name: NF2584_high_12
Description: NF2584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2584_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 15 - 263
Target Start/End: Complemental strand, 39294233 - 39293984
Alignment:
| Q |
15 |
aaaataaatatgaacttagtttccgtgtgaaataattattgatccgattttacttatcttttgctgaactccagattatcagaccatttttctttaaaat |
114 |
Q |
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| T |
39294233 |
aaaacaaatattaacttagttttcatgtgaaataattattaatccgattttatttatctcttgctgaactccagattatcagaccatttttctttaaaat |
39294134 |
T |
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| Q |
115 |
ctagagaattagaaagaaagnnnnnnn-gttatttcatgctcaaagatgttcaaagttacgttccttgctgattatgagacaccctggaggtactctaaa |
213 |
Q |
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| T |
39294133 |
ctagagaattagaaagaaaaaaaaaaaagttattacatgctcaaagatgttcaaagttacgttccttgctgattatgagacaccctggaggtgctctaaa |
39294034 |
T |
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| Q |
214 |
gaggatcagccgaacagatgcaagccgaaattaactgaaaggaaaaagat |
263 |
Q |
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| T |
39294033 |
gaggatcagccgaacacatgcaagccgaaattaactgaaaggaaaaagat |
39293984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 77
Target Start/End: Original strand, 40384909 - 40384942
Alignment:
| Q |
44 |
aaataattattgatccgattttacttatcttttg |
77 |
Q |
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| T |
40384909 |
aaataattattgatcagattttacttatcttttg |
40384942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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