View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2584_high_17 (Length: 249)
Name: NF2584_high_17
Description: NF2584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2584_high_17 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 12682978 - 12682744
Alignment:
| Q |
1 |
tttattttgagtttgttgttatgtttatgcatgcgttattttaaatttggtaagagggggctttgcacgtagccatgtaacgctcatgacaatcctaaga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
12682978 |
tttattttgagtttgttgttatgtttatgcatgcgttattttaaatttggtaagagggggctttgcacgtagccatggaacgctcatgacaatcctaaga |
12682879 |
T |
|
| Q |
101 |
atgagacatgtaacactcatgacaatgctaagaatgaggccactaatatgaggaaaatacttcgatgactttgagtttttgtgactagaggtgttaaatg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
12682878 |
atgagacatgtaacactcatgacaatgctaagaatgaggccactaatacgaggaaaatacttcgatgactttgagtttttgtgactagtggtgttaaatg |
12682779 |
T |
|
| Q |
201 |
gtttcgtccggtcctggcttggaccatgagtcagt |
235 |
Q |
| |
|
|||||||| ||||||||| || ||||||| |||| |
|
|
| T |
12682778 |
gtttcgtctggtcctggcctgagccatgagccagt |
12682744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University