View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2584_high_19 (Length: 242)

Name: NF2584_high_19
Description: NF2584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2584_high_19
NF2584_high_19
[»] chr7 (1 HSPs)
chr7 (17-242)||(14560793-14561018)
[»] chr5 (2 HSPs)
chr5 (18-242)||(153351-153575)
chr5 (18-242)||(18065680-18065904)


Alignment Details
Target: chr7 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 17 - 242
Target Start/End: Original strand, 14560793 - 14561018
Alignment:
Q  17 caactacctctgttagaaccacctccccaactgttgcaagatcttttagatggaaaccaatcagtagctagcaagaattaccaagcaaataccaggacat 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14560793 caactacctctgttagaaccacctccccaactgttgcaagatcttttagatggaaaccaatcagtagctagcaagaattaccaagcaaataccaggacat 14560892  T
Q  117 aaaaggcaatgttttcatttacctcacctgaaatgaaaatggacaatgacatcaacaatggaagaggtcccccaatattaaaaaggcaaggacaaacatg 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14560893 aaaaggcaatgttttcatttacctcacctgaaatgaaaatggacaatgacatcaacaatggaagaggtcccccaatattaaaaaggcaaggacaaacatg 14560992  T
Q  217 tcacatatttggaagtatgttgcctt 242  Q
    ||||||||||||||||||||||||||    
T  14560993 tcacatatttggaagtatgttgcctt 14561018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 242
Target Start/End: Complemental strand, 153575 - 153351
Alignment:
Q  18 aactacctctgttagaaccacctccccaactgttgcaagatcttttagatggaaaccaatcagtagctagcaagaattaccaagcaaataccaggacata 117  Q
    |||| ||||| ||||||| |||||| ||||| ||||||||| | |||  |||||||||||||  ||||| ||| |||| |||| ||||||  ||||||||    
T  153575 aacttcctcttttagaacaacctccacaacttttgcaagatttgttatttggaaaccaatcaccagctaccaaaaatttccaaacaaatataaggacata 153476  T
Q  118 aaaggcaatgttttcatttacctcacctgaaatgaaaatggacaatgacatcaacaatggaagaggtcccccaatattaaaaaggcaaggacaaacatgt 217  Q
     || || |||||||| ||||| |||||||  ||||||||||| | | | || |||||||||| |||||| ||||  |||| || ||||||||||||||||    
T  153475 caatgccatgttttcttttacttcacctggcatgaaaatggatactaaaattaacaatggaaaaggtccaccaactttaagaatgcaaggacaaacatgt 153376  T
Q  218 cacatatttggaagtatgttgcctt 242  Q
    |||| | |||||||| |||||||||    
T  153375 cacagagttggaagtctgttgcctt 153351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 242
Target Start/End: Complemental strand, 18065904 - 18065680
Alignment:
Q  18 aactacctctgttagaaccacctccccaactgttgcaagatcttttagatggaaaccaatcagtagctagcaagaattaccaagcaaataccaggacata 117  Q
    |||| ||||| ||||||| |||||| ||||| ||||||||| | |||  |||||||||||||  ||||| ||| |||| |||| ||||||  ||||||||    
T  18065904 aacttcctcttttagaacaacctccacaacttttgcaagatttgttatttggaaaccaatcaccagctaccaaaaatttccaaacaaatataaggacata 18065805  T
Q  118 aaaggcaatgttttcatttacctcacctgaaatgaaaatggacaatgacatcaacaatggaagaggtcccccaatattaaaaaggcaaggacaaacatgt 217  Q
     || || |||||||| ||||| |||||||  ||||||||||| | | | || |||||||||| |||||| ||||  |||| || ||||||||||||||||    
T  18065804 caatgccatgttttcttttacttcacctggcatgaaaatggatactaaaattaacaatggaaaaggtccaccaactttaagaatgcaaggacaaacatgt 18065705  T
Q  218 cacatatttggaagtatgttgcctt 242  Q
    |||| | |||||||| |||||||||    
T  18065704 cacagagttggaagtctgttgcctt 18065680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University