View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2584_high_2 (Length: 442)
Name: NF2584_high_2
Description: NF2584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2584_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 373; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 19 - 423
Target Start/End: Original strand, 34228435 - 34228840
Alignment:
| Q |
19 |
gaactgttaggactgtttnnnnnnnttaaaaccgaactgaaccacgttgaaaagaaccaaacctcggacggataatccacttactgagttgaacagaact |
118 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34228435 |
gaactgttaggactgtttaaaaaaattaaaaccgaactgaaccacgttgaaaagaaccaaacctcggacggataatccacttactgagttgaacagaact |
34228534 |
T |
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| Q |
119 |
ttcgagaactgcctgtctctcaatttgacttttttcgctactgttcaatttaggagttcggtttttggtatttttt-aacattcctagagagcatttatg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |
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| T |
34228535 |
ttcgagaactgcctgtctctcaatttgacttttttcgctactgttcaatttaggagttcggtttttggtatttttttaacactcctagagagcatttatg |
34228634 |
T |
|
| Q |
218 |
gtaactttaagatgttataggagtatttatcatattttgctgcaagagtggtactcttttggccaactcatgttttcgtgtaatattatgcagagaatca |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34228635 |
gtaactttaagatgttataggagtatttatcatattttgctgcaagagtggtactcttttggccaactcatgttttcgtgtaatattatgcagagaatca |
34228734 |
T |
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| Q |
318 |
cagagagacagaacaatgttgtgataactgatagaatgtgggcaaggctgttatcttcaacaaatcaacctagttttatggaggtcaaggtttccgatga |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34228735 |
cagagagacagaacaatgttgtgataactgatagaatgtgggcaaggctgttatcttcaacaaatcaacctagttttatggaggtcaaggtttccgatga |
34228834 |
T |
|
| Q |
418 |
agacac |
423 |
Q |
| |
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|||||| |
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| T |
34228835 |
agacac |
34228840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 216 - 339
Target Start/End: Original strand, 29140077 - 29140201
Alignment:
| Q |
216 |
tggtaactttaagatgttataggagtatttatcatattttg-ctgcaagagtggtactcttttggccaactcatgttttcgtgtaatattatgcagagaa |
314 |
Q |
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|||||||||||||||||||||| ||||||||||||||| | |||||||| |||||||||||||| |||||||||||| || ||| |||||||||||| |
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| T |
29140077 |
tggtaactttaagatgttatagctgtatttatcatatttcggctgcaagactggtactcttttggttaactcatgttttgttgcaatgttatgcagagaa |
29140176 |
T |
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| Q |
315 |
tcacagagagacagaacaatgttgt |
339 |
Q |
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| T |
29140177 |
tgacagatagacagaacaatgttgt |
29140201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 332 - 407
Target Start/End: Complemental strand, 30144532 - 30144456
Alignment:
| Q |
332 |
aatgttgtgataactga-tagaatgtgggcaaggctgttatcttcaacaaatcaacctagttttatggaggtcaagg |
407 |
Q |
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| T |
30144532 |
aatgctgtgataactgaatagaatatgggccaggctgttatcttcaacaaaacaacctatctttatggaagtcaagg |
30144456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 304 - 384
Target Start/End: Complemental strand, 29156681 - 29156601
Alignment:
| Q |
304 |
tatgcagagaatcacagagagacagaacaatgttgtgataactgatagaatgtgggcaaggctgttatcttcaacaaatca |
384 |
Q |
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|||||||||||||||| ||| | || | || |||||||| ||| |||||||| ||| ||||| || |||||||||||||| |
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| T |
29156681 |
tatgcagagaatcacaaagaaataggataacgttgtgattactcatagaatgctggctaggcttttgtcttcaacaaatca |
29156601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 332 - 414
Target Start/End: Complemental strand, 9787139 - 9787057
Alignment:
| Q |
332 |
aatgttgtgataactgatagaatgtgggcaaggctgttatcttcaacaaatcaacctagttttatggaggtcaaggtttccga |
414 |
Q |
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||||||||||||||||||||||| ||||| | |||||||||||||||||| ||||||| |||||||| ||||||| |||||| |
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| T |
9787139 |
aatgttgtgataactgatagaatatgggccatgctgttatcttcaacaaaacaacctatctttatggaagtcaagggttccga |
9787057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 306 - 394
Target Start/End: Complemental strand, 42977158 - 42977070
Alignment:
| Q |
306 |
tgcagagaatcacagagagacagaacaatgttgtgataactgatagaatgtgggcaaggctgttatcttcaacaaatcaacctagtttt |
394 |
Q |
| |
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|||||||||||| || ||||||||| || |||||||| ||| |||||||||| ||||| ||||||||||||||||| || |||||| |
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| T |
42977158 |
tgcagagaatcaatgaaggacagaacacagtagtgataaccgatcgaatgtgggctaggcttttatcttcaacaaatcagcccagtttt |
42977070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 301 - 386
Target Start/End: Complemental strand, 5283330 - 5283245
Alignment:
| Q |
301 |
tattatgcagagaatcacagagagacagaacaatgttgtgataactgatagaatgtgggcaaggctgttatcttcaacaaatcaac |
386 |
Q |
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|||||||||| |||||| ||||||||| || ||||| |||||||||||| ||| ||| | ||||| |||||||||||||||||| |
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| T |
5283330 |
tattatgcagtgaatcatagagagacaaaataatgtagtgataactgattgaaagtgagttaggcttctatcttcaacaaatcaac |
5283245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 241 - 286
Target Start/End: Original strand, 9571812 - 9571858
Alignment:
| Q |
241 |
tatttatcatattttg-ctgcaagagtggtactcttttggccaactc |
286 |
Q |
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||||||||| |||||| |||||||| ||||||||||||||||||||| |
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| T |
9571812 |
tatttatcacattttggctgcaagaatggtactcttttggccaactc |
9571858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 303 - 399
Target Start/End: Original strand, 20357250 - 20357346
Alignment:
| Q |
303 |
ttatgcagagaatcacagagagacagaacaatgttgtgataactgatagaatgtgggcaaggctgttatcttcaacaaatcaacctagttttatgga |
399 |
Q |
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||||||||||||||| ||| ||||| || ||||| || ||||||||||| ||||| ||||| ||||||| |||||||||| | | |||||||| |
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| T |
20357250 |
ttatgcagagaatcatagacagacaaaataatgtagttataactgatagtatgtgattcaggcttctatcttcgacaaatcaactttgctttatgga |
20357346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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