View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2584_high_3 (Length: 430)
Name: NF2584_high_3
Description: NF2584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2584_high_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 370; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 21 - 414
Target Start/End: Original strand, 25895746 - 25896139
Alignment:
| Q |
21 |
gttaatactcatcctatgcaaacaagaaccaaaactggcattcctttacgtagattaggtcttagtgttttccttatccaaactgaacctaaatttgtta |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25895746 |
gttaatactcatcctatgcaaacaagaaccaaaactggcattcctttacgtagattaggtcctagtgttttccttatccaaactgaacctaaatttgtta |
25895845 |
T |
|
| Q |
121 |
aacatgctcttaaatacccaatgtggttggcagctatgaaaaaggaatattcagctctatagaagaataaaacttggtctcttgtgcctcttccacccaa |
220 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25895846 |
aacatgctcttaaatacccgatgtggttggcagctatgaaagaggaatattcagctctatagaagaataaaacttggtctcttgtgcctcttccacccaa |
25895945 |
T |
|
| Q |
221 |
gagaactgcaattggatgcaaatggatgtttagggtcaaagaaaatgcagatgggaccctaaattagtaaaaagccatgttagtagcctagggttatcat |
320 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
25895946 |
cagaactgcaattggatgcaaatgggtgtttagggtcaaagaaaatgcagatgggaccctaaattagtaaaaagccaggttagtagcctagggttatcat |
25896045 |
T |
|
| Q |
321 |
ctacttcatggttttgattatcatgaaactttttctccagtcataaagcctgctgttactatcagattgatcctcacattggctctcacatata |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25896046 |
ctacttcatggttttgattatcatgaaactttttctccagtcataaagcctgctgttactatcagattgatcctcacattggctctcacatata |
25896139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 192 - 266
Target Start/End: Complemental strand, 6870639 - 6870565
Alignment:
| Q |
192 |
acttggtctcttgtgcctcttccacccaagagaactgcaattggatgcaaatggatgtttagggtcaaagaaaat |
266 |
Q |
| |
|
|||||||| |||||||| ||||||||||| |||| || ||||| || |||||| |||||||| | ||||||||| |
|
|
| T |
6870639 |
acttggtcacttgtgccccttccacccaacagaaaagctattggttgtaaatgggtgtttaggataaaagaaaat |
6870565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 192 - 266
Target Start/End: Original strand, 39581529 - 39581603
Alignment:
| Q |
192 |
acttggtctcttgtgcctcttccacccaagagaactgcaattggatgcaaatggatgtttagggtcaaagaaaat |
266 |
Q |
| |
|
|||||||| |||||||| ||||||||||| |||| || ||||| || |||||| |||||||| | ||||||||| |
|
|
| T |
39581529 |
acttggtcacttgtgccccttccacccaacagaaaagctattggttgtaaatgggtgtttaggataaaagaaaat |
39581603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 143 - 220
Target Start/End: Original strand, 26529981 - 26530058
Alignment:
| Q |
143 |
gtggttggcagctatgaaaaaggaatattcagctctatagaagaataaaacttggtctcttgtgcctcttccacccaa |
220 |
Q |
| |
|
|||||||||||||||| || ||||||| || | || |||| |||||||| ||||| |||||||||||||| ||||| |
|
|
| T |
26529981 |
gtggttggcagctatgcaagaggaatactctacccttgagaaaaataaaacatggtcccttgtgcctcttccccccaa |
26530058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University