View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2584_high_6 (Length: 342)

Name: NF2584_high_6
Description: NF2584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2584_high_6
NF2584_high_6
[»] chr3 (3 HSPs)
chr3 (85-325)||(14310338-14310578)
chr3 (13-61)||(14310636-14310686)
chr3 (235-322)||(22531873-22531960)
[»] chr2 (1 HSPs)
chr2 (231-325)||(6825132-6825226)
[»] chr1 (1 HSPs)
chr1 (261-325)||(27393010-27393074)
[»] chr6 (2 HSPs)
chr6 (261-316)||(17256127-17256182)
chr6 (237-308)||(25351999-25352070)
[»] chr7 (1 HSPs)
chr7 (255-325)||(23812748-23812818)
[»] chr8 (1 HSPs)
chr8 (236-304)||(25194866-25194934)


Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 85 - 325
Target Start/End: Complemental strand, 14310578 - 14310338
Alignment:
Q  85 agcttttaacctccaatacctataaactttaaccttagttaaagaatggagaaggtcggccttattatgcttgaaaatcctatgattccactttaaccac 184  Q
    ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  14310578 agcttttaacctccaatacctatgaactttaaccttagttaaggaatggagaaggtcggccttattatgcttgaaaatcctatgattccactttaaccat 14310479  T
Q  185 actaatttacactcactatcatatttaataattttgtgcatagatcaaaggtgatgtgatgcgtttcatatcagattttcaccggaacggcaaattgaca 284  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  14310478 actaatttacattcactttcatatttaataattttgtgcatagattaaagatgatgtgatgcgtttcatatcagattttcaccggaacggcaaattgaca 14310379  T
Q  285 agaggtataaacactacttttatagctcttataccaaaagt 325  Q
    ||||||||||||||||||||||||||||||||| |||||||    
T  14310378 agaggtataaacactacttttatagctcttatagcaaaagt 14310338  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 14310686 - 14310636
Alignment:
Q  13 atgaatgtaaatcgatgaaaaattttggtt--tatgtgtcttcaacaacat 61  Q
    ||||||||||||||||||||||||||||||  ||||| |||||||||||||    
T  14310686 atgaatgtaaatcgatgaaaaattttggtttatatgtctcttcaacaacat 14310636  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 235 - 322
Target Start/End: Original strand, 22531873 - 22531960
Alignment:
Q  235 gtgatgtgatgcgtttcatatcagattttcaccggaacggcaaattgacaagaggtataaacactacttttatagctcttataccaaa 322  Q
    |||||||||||||||||||    || |||||  ||||||| || ||| ||| ||||||||||| ||| |||||||||||||| |||||    
T  22531873 gtgatgtgatgcgtttcatggtggaatttcataggaacgggaagttggcaaaaggtataaacagtacatttatagctcttatcccaaa 22531960  T

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Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 231 - 325
Target Start/End: Complemental strand, 6825226 - 6825132
Alignment:
Q  231 aaaggtgatgtgatgcgtttcatatcagattttcaccggaacggcaaattgacaagaggtataaacactacttttatagctcttataccaaaagt 325  Q
    ||||| ||||||||||| ||||||||||| |||||||| |||  |||  | ||||||||||| |||||||||||||| |||||||||||||||||    
T  6825226 aaaggagatgtgatgcgcttcatatcagactttcaccgcaacatcaagctaacaagaggtattaacactacttttattgctcttataccaaaagt 6825132  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 261 - 325
Target Start/End: Original strand, 27393010 - 27393074
Alignment:
Q  261 tttcaccggaacggcaaattgacaagaggtataaacactacttttatagctcttataccaaaagt 325  Q
    |||||| ||||||  |||||| ||||||||||||| |||||||||||||||||||| || |||||    
T  27393010 tttcacaggaacgtaaaattgtcaagaggtataaatactacttttatagctcttattcccaaagt 27393074  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 261 - 316
Target Start/End: Complemental strand, 17256182 - 17256127
Alignment:
Q  261 tttcaccggaacggcaaattgacaagaggtataaacactacttttatagctcttat 316  Q
    ||||||||||| || ||| |||| |||||||| |||||||||||||||||||||||    
T  17256182 tttcaccggaatggtaaactgactagaggtatcaacactacttttatagctcttat 17256127  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 237 - 308
Target Start/End: Complemental strand, 25352070 - 25351999
Alignment:
Q  237 gatgtgatgcgtttcatatcagattttcaccggaacggcaaattgacaagaggtataaacactacttttata 308  Q
    ||||| ||||| ||||||||||| ||||| |||||||| |||||| | |||||||| |||| ||||||||||    
T  25352070 gatgtcatgcgcttcatatcagagtttcatcggaacggtaaattgtctagaggtattaacaatacttttata 25351999  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 325
Target Start/End: Complemental strand, 23812818 - 23812748
Alignment:
Q  255 tcagattttcaccggaacggcaaattgacaagaggtataaacactacttttatagctcttataccaaaagt 325  Q
    ||||| ||||||||||| || |||||||||| || |||||| | |||||| ||||||||||| || |||||    
T  23812818 tcagagtttcaccggaatggtaaattgacaaaagttataaataatactttcatagctcttattcctaaagt 23812748  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 304
Target Start/End: Complemental strand, 25194934 - 25194866
Alignment:
Q  236 tgatgtgatgcgtttcatatcagattttcaccggaacggcaaattgacaagaggtataaacactacttt 304  Q
    |||||| |||||||||||||||||  |||| |||||||| |||||| |  ||||||| |||| ||||||    
T  25194934 tgatgttatgcgtttcatatcagagcttcatcggaacggtaaattgtctcgaggtatcaacaatacttt 25194866  T

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