View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2584_low_1 (Length: 797)

Name: NF2584_low_1
Description: NF2584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2584_low_1
NF2584_low_1
[»] chr1 (11 HSPs)
chr1 (16-315)||(47449316-47449616)
chr1 (399-488)||(18919256-18919345)
chr1 (399-486)||(34462722-34462809)
chr1 (399-466)||(1640245-1640312)
chr1 (436-486)||(5327636-5327686)
chr1 (409-470)||(8301761-8301822)
chr1 (427-488)||(37705311-37705372)
chr1 (411-483)||(36438340-36438412)
chr1 (416-487)||(47853583-47853654)
chr1 (409-483)||(1607324-1607398)
chr1 (437-486)||(36567452-36567501)
[»] chr2 (7 HSPs)
chr2 (399-708)||(5577743-5578054)
chr2 (400-476)||(20556756-20556832)
chr2 (409-488)||(26009660-26009739)
chr2 (400-488)||(35977287-35977375)
chr2 (436-493)||(34929303-34929360)
chr2 (437-488)||(21620764-21620815)
chr2 (443-488)||(32644929-32644974)
[»] chr4 (8 HSPs)
chr4 (399-486)||(30468739-30468826)
chr4 (399-486)||(37861163-37861250)
chr4 (399-488)||(46963922-46964011)
chr4 (399-488)||(46362800-46362889)
chr4 (400-488)||(19399833-19399921)
chr4 (409-488)||(30666830-30666909)
chr4 (409-488)||(45891764-45891843)
chr4 (455-488)||(37056125-37056158)
[»] chr5 (6 HSPs)
chr5 (558-671)||(14014118-14014238)
chr5 (400-486)||(6825444-6825530)
chr5 (409-486)||(5736063-5736140)
chr5 (399-488)||(523626-523715)
chr5 (409-465)||(15472834-15472890)
chr5 (399-468)||(30231-30300)
[»] chr6 (6 HSPs)
chr6 (409-487)||(2588765-2588843)
chr6 (409-487)||(33565568-33565645)
chr6 (420-473)||(31954795-31954848)
chr6 (400-482)||(3768053-3768135)
chr6 (409-486)||(6256870-6256947)
chr6 (400-488)||(357140-357232)
[»] chr7 (3 HSPs)
chr7 (399-466)||(47375856-47375923)
chr7 (409-481)||(42244473-42244545)
chr7 (577-669)||(35557005-35557101)
[»] chr8 (4 HSPs)
chr8 (422-488)||(7042571-7042637)
chr8 (409-488)||(18181770-18181849)
chr8 (400-486)||(7637576-7637662)
chr8 (437-486)||(8059901-8059950)
[»] chr3 (1 HSPs)
chr3 (436-486)||(32733594-32733644)
[»] scaffold0011 (1 HSPs)
scaffold0011 (624-708)||(10093-10177)


Alignment Details
Target: chr1 (Bit Score: 261; Significance: 1e-145; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 16 - 315
Target Start/End: Complemental strand, 47449616 - 47449316
Alignment:
Q  16 taaatgagggggtgacaagtagattcttgtagatattactagtgtgactagtgaggcctaacatcattgcaattgtaatttgtaacattctcatatatgt 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  47449616 taaatgagggggtgacaagtagattcttgtagatattactagtgtgactagtgaggcctaacatcattgcaattgtaatttgtaacattctcgtatatgt 47449517  T
Q  116 tccacgtgcacgttagttgaaggaaaatttctaattgaactgaacgtggcttgccaagtagaggaataaggaagactgatgagtgtcaatagctacgatc 215  Q
    |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  47449516 tccacgtgcacgttagttgaaggaaaatttctaactaaactgaacgtggcttgccaagtagaggaataaggaagaccgaggagtgtcaatagctacgatc 47449417  T
Q  216 agtttatgaactgaacgttagattgatagtatatttggcattctctctagccct-aaacatgctttatgaaattctttatcattccctaaagggaaatat 314  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||    
T  47449416 agtttatgaactgaacgttagattgatagtatatttggcattgtctctagccctgaaacatgctttatgaaactctttgtcattccctaaagggaaatat 47449317  T
Q  315 t 315  Q
    |    
T  47449316 t 47449316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 399 - 488
Target Start/End: Complemental strand, 18919345 - 18919256
Alignment:
Q  399 ctttcaacaaattgaacgcacaatttccaaaattaagtttctacatttggtttctaaacttgtgccttaaaggcacaaattaacatttcc 488  Q
    ||||||| | |||||| ||||||||| ||||| ||||||||||||||||| || |||||||||||||||| ||||||| |||||||||||    
T  18919345 ctttcaagacattgaatgcacaattttcaaaaataagtttctacatttggcttataaacttgtgccttaagggcacaagttaacatttcc 18919256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 399 - 486
Target Start/End: Complemental strand, 34462809 - 34462722
Alignment:
Q  399 ctttcaacaaattgaacgcacaatttccaaaattaagtttctacatttggtttctaaacttgtgccttaaaggcacaaattaacattt 486  Q
    ||||||| | |||||| ||||||||| ||||| ||| ||||||||||||  ||||||||||||| ||||| ||||||| |||||||||    
T  34462809 ctttcaagacattgaatgcacaattttcaaaaataaatttctacatttgacttctaaacttgtgtcttaagggcacaagttaacattt 34462722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 399 - 466
Target Start/End: Original strand, 1640245 - 1640312
Alignment:
Q  399 ctttcaacaaattgaacgcacaatttccaaaattaagtttctacatttggtttctaaacttgtgcctt 466  Q
    ||||||| | |||||| |||||||||  ||||||||||||||||||||   |||||||||||||||||    
T  1640245 ctttcaagacattgaatgcacaatttttaaaattaagtttctacatttaacttctaaacttgtgcctt 1640312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 436 - 486
Target Start/End: Complemental strand, 5327686 - 5327636
Alignment:
Q  436 tttctacatttggtttctaaacttgtgccttaaaggcacaaattaacattt 486  Q
    ||||||||||| | ||||||||||||||||||| ||||||| |||||||||    
T  5327686 tttctacatttagcttctaaacttgtgccttaagggcacaagttaacattt 5327636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 409 - 470
Target Start/End: Original strand, 8301761 - 8301822
Alignment:
Q  409 attgaacgcacaatttccaaaattaagtttctacatttggtttctaaacttgtgccttaaag 470  Q
    |||||| |||||||||  ||||||||||||||||||||| ||| | |||||||| |||||||    
T  8301761 attgaatgcacaatttttaaaattaagtttctacatttgattttttaacttgtgtcttaaag 8301822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 427 - 488
Target Start/End: Complemental strand, 37705372 - 37705311
Alignment:
Q  427 aaaattaagtttctacatttggtttctaaacttgtgccttaaaggcacaaattaacatttcc 488  Q
    |||||| ||||||||||||||  ||||||||||||| ||||| | ||||| |||||||||||    
T  37705372 aaaatttagtttctacatttgacttctaaacttgtgtcttaaggacacaagttaacatttcc 37705311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 411 - 483
Target Start/End: Complemental strand, 36438412 - 36438340
Alignment:
Q  411 tgaacgcacaatttccaaaattaagtttctacatttggtttctaaacttgtgccttaaaggcacaaattaaca 483  Q
    |||| ||| ||||||||| ||||||||||||||||| |||||| | |||||||| | | ||||||| ||||||    
T  36438412 tgaatgcaaaatttccaagattaagtttctacatttagtttcttatcttgtgcccttagggcacaagttaaca 36438340  T

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Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 416 - 487
Target Start/End: Original strand, 47853583 - 47853654
Alignment:
Q  416 gcacaatttccaaaattaagtttctacatttggtttctaaacttgtgccttaaaggcacaaattaacatttc 487  Q
    |||||||||| |||||||||| |||||||||   || ||||||||||| |||  ||||||| ||||||||||    
T  47853583 gcacaatttctaaaattaagtctctacattttacttataaacttgtgcattatgggcacaagttaacatttc 47853654  T

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Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 409 - 483
Target Start/End: Complemental strand, 1607398 - 1607324
Alignment:
Q  409 attgaacgcacaatttccaaaattaagtttctacatttggtttctaaacttgtgccttaaaggcacaaattaaca 483  Q
    |||||| ||||||||| |||| |||| ||||||||||| |||||| |  ||||||| ||| ||||||| ||||||    
T  1607398 attgaatgcacaattttcaaagttaaatttctacatttagtttcttatattgtgccctaagggcacaagttaaca 1607324  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 437 - 486
Target Start/End: Original strand, 36567452 - 36567501
Alignment:
Q  437 ttctacatttggtttctaaacttgtgccttaaaggcacaaattaacattt 486  Q
    |||||||||| |||||| ||||| |||| ||||||||||| |||||||||    
T  36567452 ttctacatttagtttcttaacttctgccctaaaggcacaagttaacattt 36567501  T

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Target: chr2 (Bit Score: 206; Significance: 1e-112; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 399 - 708
Target Start/End: Complemental strand, 5578054 - 5577743
Alignment:
Q  399 ctttcaacaaattgaacgcacaatttccaaaattaagtttctacatttggtttctaaacttgtgccttaaaggcacaaattaacatttccatttaaaggt 498  Q
    ||||||| | ||| || ||||||||||||||||||| |||| |||||||||||||||||||||||||||| | ||||||||||||||||| ||||||| |    
T  5578054 ctttcaagatattaaatgcacaatttccaaaattaaatttcgacatttggtttctaaacttgtgccttaaggacacaaattaacatttccctttaaagat 5577955  T
Q  499 tactttctcttgcaattttagaaatgaaaagccactttatcgcaacgacgacttatgaactcaccttcatagccagcaaacacttcaccttcgacgctct 598  Q
    |||||||||||||||||||||||| ||||||||||| ||||||||||||||||| | | ||||||||||||||| ||||||||||||||||||||||  |    
T  5577954 tactttctcttgcaattttagaaacgaaaagccactctatcgcaacgacgacttctaatctcaccttcatagccggcaaacacttcaccttcgacgc--t 5577857  T
Q  599 ctccatcttatatttcgtaaatc----acttgtttgttttcatctacgacgttcacttgcttcctttccatgtaatcagtgtcttgtttaacgtgtttca 694  Q
    |||||  ||||||||||||||||    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5577856 ctccagtttatatttcgtaaatcacttacttgtttgttttcatctacggcgttcacttgcttcctttccatgtaatcagtgtcttgtttaacgtgtttca 5577757  T
Q  695 tccagggcagaatt 708  Q
    ||| ||||||||||    
T  5577756 tccggggcagaatt 5577743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 400 - 476
Target Start/End: Complemental strand, 20556832 - 20556756
Alignment:
Q  400 tttcaacaaattgaacgcacaatttccaaaattaagtttctacatttggtttctaaacttgtgccttaaaggcacaa 476  Q
    |||||| | |||||| |||| |||||||||||||||||||||||||| ||||||||||||||| |||||| ||||||    
T  20556832 tttcaagacattgaatgcacgatttccaaaattaagtttctacatttagtttctaaacttgtgtcttaaaagcacaa 20556756  T

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Target: chr2; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 409 - 488
Target Start/End: Original strand, 26009660 - 26009739
Alignment:
Q  409 attgaacgcacaatttccaaaattaagtttctacatttggtttctaaacttgtgccttaaaggcacaaattaacatttcc 488  Q
    |||||| |||| |||||||||||||  ||||||||||| | ||||||||||||||||||| ||||||| ||| |||||||    
T  26009660 attgaatgcacgatttccaaaattatatttctacatttagcttctaaacttgtgccttaagggcacaagttagcatttcc 26009739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 400 - 488
Target Start/End: Complemental strand, 35977375 - 35977287
Alignment:
Q  400 tttcaacaaattgaacgcacaatttccaaaattaagtttctacatttggtttctaaacttgtgccttaaaggcacaaattaacatttcc 488  Q
    |||||| | |||||| ||| |||||| |||||||||||| |||||| | ||| |||||||||  |||||| ||||||||||||||||||    
T  35977375 tttcaagacattgaatgcataatttctaaaattaagtttttacattcgatttttaaacttgtaacttaaaagcacaaattaacatttcc 35977287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 436 - 493
Target Start/End: Original strand, 34929303 - 34929360
Alignment:
Q  436 tttctacatttggtttctaaacttgtgccttaaaggcacaaattaacatttccattta 493  Q
    ||||||||||||| || |||||||||||||||| ||||||| ||||||||||| ||||    
T  34929303 tttctacatttggcttataaacttgtgccttaagggcacaagttaacatttcccttta 34929360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 437 - 488
Target Start/End: Original strand, 21620764 - 21620815
Alignment:
Q  437 ttctacatttggtttctaaacttgtgccttaaaggcacaaattaacatttcc 488  Q
    ||||||||||||||||| ||||| ||||| |||||||||| |||||||||||    
T  21620764 ttctacatttggtttcttaacttatgcctcaaaggcacaagttaacatttcc 21620815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 443 - 488
Target Start/End: Original strand, 32644929 - 32644974
Alignment:
Q  443 atttggtttctaaacttgtgccttaaaggcacaaattaacatttcc 488  Q
    |||||| ||||||||||||| ||||||||||||| |||||||||||    
T  32644929 atttggcttctaaacttgtgtcttaaaggcacaagttaacatttcc 32644974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 6e-30; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 399 - 486
Target Start/End: Original strand, 30468739 - 30468826
Alignment:
Q  399 ctttcaacaaattgaacgcacaatttccaaaattaagtttctacatttggtttctaaacttgtgccttaaaggcacaaattaacattt 486  Q
    |||||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |||||||||    
T  30468739 ctttcaacaaattgaatgtacaatttccaaaattaagtttctatatttggtttctaaacttgtgcctttaaggcacaagttaacattt 30468826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 399 - 486
Target Start/End: Complemental strand, 37861250 - 37861163
Alignment:
Q  399 ctttcaacaaattgaacgcacaatttccaaaattaagtttctacatttggtttctaaacttgtgccttaaaggcacaaattaacattt 486  Q
    ||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||    
T  37861250 ctttcaagacattgaatgcacaatttccaaaattaagtttctacatttggtttctaaacttgtgccttaagggcacaagttaacattt 37861163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 399 - 488
Target Start/End: Original strand, 46963922 - 46964011
Alignment:
Q  399 ctttcaacaaattgaacgcacaatttccaaaattaagtttctacatttggtttctaaacttgtgccttaaaggcacaaattaacatttcc 488  Q
    ||||||| | |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||    
T  46963922 ctttcaagacattgaatgcacgatttccaaaattaagtttctacatttggtttctaaacttgtgccttaagggcacaagttaacatttcc 46964011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 399 - 488
Target Start/End: Original strand, 46362800 - 46362889
Alignment:
Q  399 ctttcaacaaattgaacgcacaatttccaaaattaagtttctacatttggtttctaaacttgtgccttaaaggcacaaattaacatttcc 488  Q
    ||||||| | |||||| |||||||||||||||||||||||||||| ||| ||| ||||||||||| |||| ||||||| |||||||||||    
T  46362800 ctttcaagacattgaatgcacaatttccaaaattaagtttctacagttgttttataaacttgtgctttaagggcacaagttaacatttcc 46362889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 400 - 488
Target Start/End: Complemental strand, 19399921 - 19399833
Alignment:
Q  400 tttcaacaaattgaacgcacaatttccaaaattaagtttctacatttggtttctaaacttgtgccttaaaggcacaaattaacatttcc 488  Q
    |||||| | |||||| ||||||||||||||| |||||||||| |||||| | ||||||||||| ||||| ||||||| |||| ||||||    
T  19399921 tttcaagacattgaatgcacaatttccaaaaataagtttctatatttggctactaaacttgtgtcttaagggcacaagttaatatttcc 19399833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 409 - 488
Target Start/End: Complemental strand, 30666909 - 30666830
Alignment:
Q  409 attgaacgcacaatttccaaaattaagtttctacatttggtttctaaacttgtgccttaaaggcacaaattaacatttcc 488  Q
    |||||| |||||| ||||||||  ||  ||||||||||||||||| ||||||||||| || ||||||| |||||||||||    
T  30666909 attgaatgcacaagttccaaaaaaaaccttctacatttggtttcttaacttgtgcctcaagggcacaagttaacatttcc 30666830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 409 - 488
Target Start/End: Complemental strand, 45891843 - 45891764
Alignment:
Q  409 attgaacgcacaatttccaaaattaagtttctacatttggtttctaaacttgtgccttaaaggcacaaattaacatttcc 488  Q
    |||||| ||||||| ||||| |  | |||||||  |||||||||| ||||||||||||||  |||||| |||||||||||    
T  45891843 attgaatgcacaatctccaacaaaatgtttctaactttggtttcttaacttgtgccttaagagcacaagttaacatttcc 45891764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 455 - 488
Target Start/End: Complemental strand, 37056158 - 37056125
Alignment:
Q  455 aacttgtgccttaaaggcacaaattaacatttcc 488  Q
    |||||||||||||||||||||| |||||||||||    
T  37056158 aacttgtgccttaaaggcacaagttaacatttcc 37056125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 1e-24; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 558 - 671
Target Start/End: Complemental strand, 14014238 - 14014118
Alignment:
Q  558 ctcaccttcatagccagcaaacacttcaccttcgacgctctctccatcttatatttcgtaaatcac-------ttgtttgttttcatctacgacgttcac 650  Q
    ||||||| ||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||||       |||||||| |||||| | |||||||||    
T  14014238 ctcacctccatagccggcaaacacttcaccttcgacgctctctccagcttgtatttcgtaaatcacttacttgttgtttgtgttcatcaatgacgttcac 14014139  T
Q  651 ttgcttcctttccatgtaatc 671  Q
     |||||||||| |||||||||    
T  14014138 gtgcttccttttcatgtaatc 14014118  T

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Target: chr5; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 400 - 486
Target Start/End: Original strand, 6825444 - 6825530
Alignment:
Q  400 tttcaacaaattgaacgcacaatttccaaaattaagtttctacatttggtttctaaacttgtgccttaaaggcacaaattaacattt 486  Q
    |||||| | |||||| ||||||||| ||||| ||||||| ||| ||||| || |||||||||||||||| |||||||||||||||||    
T  6825444 tttcaagacattgaatgcacaattttcaaaaataagtttttacgtttggcttttaaacttgtgccttaagggcacaaattaacattt 6825530  T

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Target: chr5; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 409 - 486
Target Start/End: Original strand, 5736063 - 5736140
Alignment:
Q  409 attgaacgcacaatttccaaaattaagtttctacatttggtttctaaacttgtgccttaaaggcacaaattaacattt 486  Q
    |||||| ||||||||||||||| ||||||||||||||||| | ||||||||||  ||||| ||||||| |||||||||    
T  5736063 attgaatgcacaatttccaaaaataagtttctacatttggctactaaacttgtatcttaagggcacaagttaacattt 5736140  T

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Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 399 - 488
Target Start/End: Complemental strand, 523715 - 523626
Alignment:
Q  399 ctttcaacaaattgaacgcacaatttccaaaattaagtttctacatttggtttctaaacttgtgccttaaaggcacaaattaacatttcc 488  Q
    ||||||| | ||| || ||||||||| ||||| ||| ||| || |||||| ||||||||||||||||||| ||||||| |||||||||||    
T  523715 ctttcaagacattaaatgcacaattttcaaaaataaatttttatatttggcttctaaacttgtgccttaagggcacaagttaacatttcc 523626  T

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Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 409 - 465
Target Start/End: Complemental strand, 15472890 - 15472834
Alignment:
Q  409 attgaacgcacaatttccaaaattaagtttctacatttggtttctaaacttgtgcct 465  Q
    |||||| ||||||||||||||| |||||||||||||||   ||||||||||||||||    
T  15472890 attgaatgcacaatttccaaaaataagtttctacatttaacttctaaacttgtgcct 15472834  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 399 - 468
Target Start/End: Complemental strand, 30300 - 30231
Alignment:
Q  399 ctttcaacaaattgaacgcacaatttccaaaattaagtttctacatttggtttctaaacttgtgccttaa 468  Q
    ||||||| | |||||| | ||||||| ||||||| | ||||||||||||| |||| ||||| ||||||||    
T  30300 ctttcaagacattgaatggacaattttcaaaattcaatttctacatttggcttcttaacttatgccttaa 30231  T

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Target: chr6 (Bit Score: 55; Significance: 3e-22; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 409 - 487
Target Start/End: Complemental strand, 2588843 - 2588765
Alignment:
Q  409 attgaacgcacaatttccaaaattaagtttctacatttggtttctaaacttgtgccttaaaggcacaaattaacatttc 487  Q
    |||||| ||||||||| |||||||||||||||||||||||||| |||||||||| ||||| ||||||| ||||||||||    
T  2588843 attgaatgcacaattttcaaaattaagtttctacatttggtttataaacttgtgtcttaagggcacaagttaacatttc 2588765  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 409 - 487
Target Start/End: Original strand, 33565568 - 33565645
Alignment:
Q  409 attgaacgcacaatttccaaaattaagtttctacatttggtttctaaacttgtgccttaaaggcacaaattaacatttc 487  Q
    |||||| |||||||||||||||||| ||||||||||| ||||||| ||||||| |||| ||||||||| |||| |||||    
T  33565568 attgaatgcacaatttccaaaattatgtttctacattaggtttcttaacttgttcctt-aaggcacaagttaaaatttc 33565645  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 420 - 473
Target Start/End: Complemental strand, 31954848 - 31954795
Alignment:
Q  420 aatttccaaaattaagtttctacatttggtttctaaacttgtgccttaaaggca 473  Q
    |||||| |||||||||||| ||||||||| |||||||||| |||||||||||||    
T  31954848 aatttctaaaattaagtttttacatttggcttctaaacttctgccttaaaggca 31954795  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 400 - 482
Target Start/End: Complemental strand, 3768135 - 3768053
Alignment:
Q  400 tttcaacaaattgaacgcacaatttccaaaattaagtttctacatttggtttctaaacttgtgccttaaaggcacaaattaac 482  Q
    |||||| | ||||||  |||||||||||||| ||||||| |||| |||  | ||||||||||||||||| ||||||| |||||    
T  3768135 tttcaagatattgaatacacaatttccaaaaataagtttttacacttgactactaaacttgtgccttaagggcacaagttaac 3768053  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 409 - 486
Target Start/End: Complemental strand, 6256947 - 6256870
Alignment:
Q  409 attgaacgcacaatttccaaaattaagtttctacatttggtttctaaacttgtgccttaaaggcacaaattaacattt 486  Q
    |||||| | ||||||||  ||||||||||||||||||||  |||  || |||| |||||||||||||||||| |||||    
T  6256947 attgaatgtacaatttcacaaattaagtttctacatttgacttcctaatttgtaccttaaaggcacaaattagcattt 6256870  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 400 - 488
Target Start/End: Complemental strand, 357232 - 357140
Alignment:
Q  400 tttcaacaaattgaacgcacaatttccaaaattaagtttctacatttggtttctaaacttgtg----ccttaaaggcacaaattaacatttcc 488  Q
    |||||| | |||||| ||||||||| ||||| ||| ||||||||||||| ||||||| |||||    |||||| ||||||| ||| |||||||    
T  357232 tttcaaaacattgaatgcacaattttcaaaaataaatttctacatttggcttctaaatttgtgtcttccttaagggcacaagttagcatttcc 357140  T

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Target: chr7 (Bit Score: 48; Significance: 5e-18; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 399 - 466
Target Start/End: Original strand, 47375856 - 47375923
Alignment:
Q  399 ctttcaacaaattgaacgcacaatttccaaaattaagtttctacatttggtttctaaacttgtgcctt 466  Q
    ||||||| | |||||| ||||||||||||||| ||||||||||||||||| |||||||||||||||||    
T  47375856 ctttcaagacattgaatgcacaatttccaaaaataagtttctacatttggattctaaacttgtgcctt 47375923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 409 - 481
Target Start/End: Original strand, 42244473 - 42244545
Alignment:
Q  409 attgaacgcacaatttccaaaattaagtttctacatttggtttctaaacttgtgccttaaaggcacaaattaa 481  Q
    |||||| | ||||||||||||| |||||||||||||||   |||||||||||||| |||||||||||| ||||    
T  42244473 attgaatgtacaatttccaaaaataagtttctacatttaaattctaaacttgtgcgttaaaggcacaagttaa 42244545  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 577 - 669
Target Start/End: Complemental strand, 35557101 - 35557005
Alignment:
Q  577 aacacttcaccttcgacgctctctccatcttatatttcgtaaatcacttg----tttgttttcatctacgacgttcacttgcttcctttccatgtaa 669  Q
    ||||||||||| |||||| |||||| |  || |||||| |||||||||||    |||||||||||| ||||||||||||| |||||||| |||||||    
T  35557101 aacacttcaccatcgacgttctctcaagtttgtatttcataaatcacttgcttttttgttttcatcgacgacgttcacttacttccttttcatgtaa 35557005  T

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Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 422 - 488
Target Start/End: Complemental strand, 7042637 - 7042571
Alignment:
Q  422 tttccaaaattaagtttctacatttggtttctaaacttgtgccttaaaggcacaaattaacatttcc 488  Q
    ||||||||| |||||||||||| ||  |||||||||||||||||| | ||||||| |||||||||||    
T  7042637 tttccaaaaataagtttctacaattaatttctaaacttgtgccttgagggcacaagttaacatttcc 7042571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 409 - 488
Target Start/End: Original strand, 18181770 - 18181849
Alignment:
Q  409 attgaacgcacaatttccaaaattaagtttctacatttggtttctaaacttgtgccttaaaggcacaaattaacatttcc 488  Q
    |||||| ||||||||| |||||  |||||||||||||||| |  |||| || |||||||| ||||||| ||| |||||||    
T  18181770 attgaatgcacaattttcaaaaacaagtttctacatttggctattaaatttatgccttaagggcacaagttagcatttcc 18181849  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 400 - 486
Target Start/End: Complemental strand, 7637662 - 7637576
Alignment:
Q  400 tttcaacaaattgaacgcacaatttccaaaattaagtttctacatttggtttctaaacttgtgccttaaaggcacaaattaacattt 486  Q
    |||||| | |||||| ||||||||| |||||  ||  |||||||||||  ||||||||||||||||||| | || |||||| |||||    
T  7637662 tttcaagacattgaatgcacaattttcaaaagaaaaattctacatttgacttctaaacttgtgccttaaggacaaaaattagcattt 7637576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 437 - 486
Target Start/End: Complemental strand, 8059950 - 8059901
Alignment:
Q  437 ttctacatttggtttctaaacttgtgccttaaaggcacaaattaacattt 486  Q
    ||||||||||||||||| ||||| ||||| || ||||||| |||||||||    
T  8059950 ttctacatttggtttcttaacttatgcctcaagggcacaagttaacattt 8059901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 436 - 486
Target Start/End: Complemental strand, 32733644 - 32733594
Alignment:
Q  436 tttctacatttggtttctaaacttgtgccttaaaggcacaaattaacattt 486  Q
    ||||||||||||| || |||||||||| ||||| |||||||||||||||||    
T  32733644 tttctacatttggcttataaacttgtgtcttaagggcacaaattaacattt 32733594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 624 - 708
Target Start/End: Complemental strand, 10177 - 10093
Alignment:
Q  624 ttgtttgttttcatctacgacgttcacttgcttcctttccatgtaatcagtgtcttgtttaacgtgtttcatccagggcagaatt 708  Q
    ||||||||||||||| | |||||||| |||||||||||  ||||||||  || |||||| ||  ||||||||| |||| ||||||    
T  10177 ttgtttgttttcatcgatgacgttcagttgcttcctttttatgtaatcgttgccttgttcaatatgtttcatctagggtagaatt 10093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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