View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2584_low_10 (Length: 339)
Name: NF2584_low_10
Description: NF2584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2584_low_10 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 297; Significance: 1e-167; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 18 - 330
Target Start/End: Complemental strand, 3080731 - 3080419
Alignment:
| Q |
18 |
agaagatactaaacgaaattaaggatggtggtcaaagagatgaagcaatgaaatcaattattgttgagtcgaaaattcgtgcaaatttcccaattcatgg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3080731 |
agaagatactaaacgaaattaaggatggtggtcaaagagatgaagcaatgaaatcaattattgttgagtcgaaaattcgtgcaaatttcccaattcatgg |
3080632 |
T |
|
| Q |
118 |
atgtcttggtgttattcatatgtatgcaggtatgataaataagtcttctaaagagttagatcaattaaaatggctattagcttattgtaagcaaaacaac |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3080631 |
atgtcttggtgttattcatatgtatgcaggtatgataaataagtcttctaaagagttagatcaattaaaatggctattagcttattgtaagcaaaacaac |
3080532 |
T |
|
| Q |
218 |
catttacaacaacaaaatctttatttctccatagcttctactagttttcaagtgtttaataattatggtgatgttggtaattattatcacaatagtgaaa |
317 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
3080531 |
catttacaacaacaaaatctttattcctccataccttctactagttttcaagtgtttaacaattatggtgatgttggtaattattatcaaaatagtgaaa |
3080432 |
T |
|
| Q |
318 |
ataatatgatgat |
330 |
Q |
| |
|
||||||||||||| |
|
|
| T |
3080431 |
ataatatgatgat |
3080419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 133
Target Start/End: Complemental strand, 325058 - 324980
Alignment:
| Q |
55 |
agatgaagcaatgaaatcaattattgttgagtcgaaaattcgtgcaaatttcccaattcatggatgtcttggtgttatt |
133 |
Q |
| |
|
||||||||||||||| || |||||| ||||||| |||| ||||||| | ||||| |||||||||||||||| ||||| |
|
|
| T |
325058 |
agatgaagcaatgaagtcgattatttttgagtcagaaatgcgtgcaagatacccaagtcatggatgtcttggtcttatt |
324980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 62 - 136
Target Start/End: Original strand, 3104414 - 3104488
Alignment:
| Q |
62 |
gcaatgaaatcaattattgttgagtcgaaaattcgtgcaaatttcccaattcatggatgtcttggtgttattcat |
136 |
Q |
| |
|
|||||| | ||||||||| |||||||| | ||||||||| | ||||| ||||||||||| |||||||||||||| |
|
|
| T |
3104414 |
gcaatggattcaattatttttgagtcggatattcgtgcagaattccccgttcatggatgtgttggtgttattcat |
3104488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 53 - 133
Target Start/End: Complemental strand, 3094019 - 3093939
Alignment:
| Q |
53 |
agagatgaagcaatgaaatcaattattgttgagtcgaaaattcgtgcaaatttcccaattcatggatgtcttggtgttatt |
133 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||||| | || ||||| | ||||| || ||||||||||| ||||||| |
|
|
| T |
3094019 |
agagatgatgcaatgaaatcaattattattgagtcggatatgcgtgctcaattccctgttggtggatgtcttgatgttatt |
3093939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 55 - 180
Target Start/End: Original strand, 41122107 - 41122232
Alignment:
| Q |
55 |
agatgaagcaatgaaatcaattattgttgagtcgaaaattcgtgcaaatttcccaattcatggatgtcttggtgttattcatatgtatgcaggtatgata |
154 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| | || ||||||| ||||| | ||||||||| ||||||||||||||||| | ||| ||| || |
|
|
| T |
41122107 |
agatgaagcaatgaaatcaattatctttgagtcggatatgcgtgcaagattccctgctactggatgtctcggtgttattcatatgtacggaggcatgtta |
41122206 |
T |
|
| Q |
155 |
aataagtcttctaaagagttagatca |
180 |
Q |
| |
|
|| |||||| | | ||||||||||| |
|
|
| T |
41122207 |
aagaagtctgttgatgagttagatca |
41122232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 133
Target Start/End: Original strand, 36915133 - 36915244
Alignment:
| Q |
22 |
gatactaaacgaaattaaggatggtggtcaaagagatgaagcaatgaaatcaattattgttgagtcgaaaattcgtgcaaatttcccaattcatggatgt |
121 |
Q |
| |
|
||||||||| || || ||||||| || ||||| ||||| || |||| ||| || ||| |||||||| | ||||||||||| || || ||||||||||| |
|
|
| T |
36915133 |
gatactaaaagatatcaaggatgatgatcaaaaagatgttgcgatgagatccataattattgagtcggatattcgtgcaaaatttcccgttcatggatgt |
36915232 |
T |
|
| Q |
122 |
cttggtgttatt |
133 |
Q |
| |
|
|||||||||||| |
|
|
| T |
36915233 |
cttggtgttatt |
36915244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University