View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2584_low_12 (Length: 322)

Name: NF2584_low_12
Description: NF2584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2584_low_12
NF2584_low_12
[»] scaffold0426 (1 HSPs)
scaffold0426 (18-314)||(2876-3172)


Alignment Details
Target: scaffold0426 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: scaffold0426
Description:

Target: scaffold0426; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 18 - 314
Target Start/End: Complemental strand, 3172 - 2876
Alignment:
Q  18 ctttgaagagtcaggctcaagactgaattcttcagataaggcaacgtacacttttcacgcaaacaaaaaactcaattaaacctacaagaattaggttata 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3172 ctttgaagagtcaggctcaagactgaattcttcagataaggcaacgtacacttttcacgcaaacaaaaaactcaattaaacctacaagaattaggttata 3073  T
Q  118 agagattcaaaataaattatctatctgagaaattgtcaaatttaaaagaatcacgtaattctttaatcaaaagacagtcacatgtttcattattatttgg 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3072 agagattcaaaataaattatctatctgagaaattgtcaaatttaaaagaatcacgtaattctttaatcaaaagacagtcacatgtttcattattatttgg 2973  T
Q  218 ttgtcaagtttgctactgcttcctctccnnnnnnnnnnnnnntgttggctactgcttgaaattctgctatacaaattgtattataaagtcctatgct 314  Q
    ||||||||||||||||||||||||||||              |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2972 ttgtcaagtttgctactgcttcctctccaaaaaaaataaaaatgttggctactgcttgaaattctgctatacaaattgtattataaagtcctatgct 2876  T

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