View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2584_low_2 (Length: 767)
Name: NF2584_low_2
Description: NF2584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2584_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 653; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 653; E-Value: 0
Query Start/End: Original strand, 8 - 749
Target Start/End: Complemental strand, 25788137 - 25787404
Alignment:
| Q |
8 |
ccaagaaaataaaataattaaccaacagatattgatagcttccacggctgtttgttctcgttgttattacttattcagttctatcttttacttgttttct |
107 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
25788137 |
ccaaaaaaataaaataattaaccaacagatattgatagcttccacggctgttt--------tgttattacttattcagttctatcttttacttgttttct |
25788046 |
T |
|
| Q |
108 |
cactaagtactaaattgagttaatacatgatgaaagaataccaaatatgtaacttgaagcaaaatgggagagcataaaattgcaacctgaagctacattg |
207 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25788045 |
cactaagtactaaattgagttaatgcatgatgaaagaataccaaatatgtaacttgaagcaaaatgggagagcataaaattgcaacctgaagctacattg |
25787946 |
T |
|
| Q |
208 |
agcacaagaaatgccatccnnnnnnnnttaaactcacatcaagcctagttcataattgtgatgtactaataatagaattgtcatgtcatattagccgcaa |
307 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||| |
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| T |
25787945 |
agcacaagaaatgccatccaaacaaaattaaactcacatcaagcctagttcataattgtgatgtattaaaaataaaattgtcatgtcatattagccgcaa |
25787846 |
T |
|
| Q |
308 |
aaaggtcgcaaacaatctaaatggctaaattgtccagcaatataatgcaatcaaatttaagcagctgcagcctgttgagaagcagccatccgcttcctag |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25787845 |
aaaggtcgcaaacaatctaaatggctaaattgtccagcaatataatgcaatcaaatttaagcagctgcagcctgttgagaagcagccatccgcttcctag |
25787746 |
T |
|
| Q |
408 |
cctcctcaatgacggtcaatttgatacctctgcctttgggaagagacacccaaggtttcggccctctgccaatggtgaagacattacccaatcgggttgc |
507 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25787745 |
cctcctcaatgacggtcaatttgatacctctgcctttgggaagagacacccaaggtttcggccctctgccaatggtgaagacattacccaatcgggttgc |
25787646 |
T |
|
| Q |
508 |
aaactcatgaccagcagcatcctggacatgaatggtctcaaaagtgcccatgtgtttctctctgttcttgatgaaaccaacacgacctctgttccttcct |
607 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
25787645 |
aaactcatgaccagcagcatcctggacatgaatcgtctcaaaagtgcccatgtgtttctttctgttcttgatgaaaccaacacgacctctgttccttcct |
25787546 |
T |
|
| Q |
608 |
ccagtcaccataacaatattccccacatcaaatttgatgaaatcggttatcttgttttgttccaagtctagtttgattgtgtcattggccttaataaggg |
707 |
Q |
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| T |
25787545 |
ccagtcaccataacaacattccccacatcaaatttgatgaaatcggttatcttgttctgttccaagtctagtttgattgtgtcattggccttaataaggg |
25787446 |
T |
|
| Q |
708 |
gatcaggatagcggattgtacgcccatcataggtgttcagat |
749 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25787445 |
gatcaggatagcggattgtacgcccatcataggtgttcagat |
25787404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 134; Significance: 2e-69; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 404 - 749
Target Start/End: Original strand, 4139469 - 4139814
Alignment:
| Q |
404 |
ctagcctcctcaatgacggtcaatttgatacctctgcctttgggaagagacacccaaggtttcggccctctgccaatggtgaagacattacccaatcggg |
503 |
Q |
| |
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|||||||| ||||| || ||||| ||||||||| | ||||| |||||||||||||||||||| | ||| ||||||| || || ||||| |||| || | |
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| T |
4139469 |
ctagcctcttcaataacagtcaacttgatacctttacctttaggaagagacacccaaggttttgttcctttgccaatagtaaacacattgcccagccgag |
4139568 |
T |
|
| Q |
504 |
ttgcaaactcatgaccagcagcatcctggacatgaatggtctcaaaagtgcccatgtgtttctctctgttcttgatgaaaccaacacgacctctgttcct |
603 |
Q |
| |
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| ||||||||||||||| |||||||| || ||||| ||||||||||| || | |||||||||||||||||||||| ||||||||||||||| ||||| |
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| T |
4139569 |
tggcaaactcatgaccacttgcatcctgaacgtgaatagtctcaaaagttcctttatgtttctctctgttcttgatgacaccaacacgacctctattcct |
4139668 |
T |
|
| Q |
604 |
tcctccagtcaccataacaatattccccacatcaaatttgatgaaatcggttatcttgttttgttccaagtctagtttgattgtgtcattggccttaata |
703 |
Q |
| |
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|||||| || ||||| |||| ||||||||||||||| ||||| ||||| || |||||||| | ||| | ||| |||||||| |||||||| |||||||| |
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| T |
4139669 |
tcctccggtaaccatgacaacattccccacatcaaacttgataaaatcagtgatcttgttgttttcaaggtcaagtttgatggtgtcattagccttaatt |
4139768 |
T |
|
| Q |
704 |
aggggatcaggatagcggattgtacgcccatcataggtgttcagat |
749 |
Q |
| |
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|| ||||| ||||| ||||| || || ||||||||||||||||||| |
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| T |
4139769 |
agtggatctggataacggatggtgcgaccatcataggtgttcagat |
4139814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 400 - 747
Target Start/End: Original strand, 7109133 - 7109480
Alignment:
| Q |
400 |
cttcctagcctcctcaatgacggtcaatttgatacctctgcctttgggaagagacacccaaggtttcggccctctgccaatggtgaagacattacccaat |
499 |
Q |
| |
|
||||||||| ||||||||||| || ||||| ||||| | || ||||||||||| ||||| || || | ||| ||||||| ||||| ||||| ||| |
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| T |
7109133 |
cttcctagcttcctcaatgacagttaatttaatacccttacccttgggaagagatacccatggctttgtccccttgccaatagtgaacacattgaccaga |
7109232 |
T |
|
| Q |
500 |
cgggttgcaaactcatgaccagcagcatcctggacatgaatggtctcaaaagtgcccatgtgtttctctctgttcttgatgaaaccaacacgacctctgt |
599 |
Q |
| |
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|| ||||||||||||||||||| |||||||| || || || |||||||| || ||| | || || |||||||||||||| | |||||||| || || | |
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| T |
7109233 |
cgagttgcaaactcatgaccagtggcatcctgaacgtggattgtctcaaaggttcccttatgcttttctctgttcttgatcactccaacacgccccctat |
7109332 |
T |
|
| Q |
600 |
tccttcctccagtcaccataacaatattccccacatcaaatttgatgaaatcggttatcttgttttgttccaagtctagtttgattgtgtcattggcctt |
699 |
Q |
| |
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|| | || ||||| ||||| || | |||||| ||||| ||||||||||||||| |||||||||| || | ||| || |||||||||||||| ||| | |
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| T |
7109333 |
tcttaccaccagtaaccatcactacattcccaacatcgaatttgatgaaatcgacaatcttgttttcctcaaggtccagcttgattgtgtcattagccct |
7109432 |
T |
|
| Q |
700 |
aataaggggatcaggatagcggattgtacgcccatcataggtgttcag |
747 |
Q |
| |
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|| | || ||||| |||||||| || || ||||||||||||||||| |
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| T |
7109433 |
gatgactgggtcagggtagcggatagtgcgaccatcataggtgttcag |
7109480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 474 - 744
Target Start/End: Original strand, 19326687 - 19326957
Alignment:
| Q |
474 |
tgccaatggtgaagacattacccaatcgggttgcaaactcatgaccagcagcatcctggacatgaatggtctcaaaagtgcccatgtgtttctctctgtt |
573 |
Q |
| |
|
||||||| || || ||||| |||| || ||||| ||||||||||||| |||||||| || || || ||||| || || ||| | || ||||||||||| |
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| T |
19326687 |
tgccaatagtaaacacattgaccaaacgagttgcgaactcatgaccagtggcatcctgaacgtggattgtctcgaatgttcccttatgcttctctctgtt |
19326786 |
T |
|
| Q |
574 |
cttgatgaaaccaacacgacctctgttccttcctccagtcaccataacaatattccccacatcaaatttgatgaaatcggttatcttgttttgttccaag |
673 |
Q |
| |
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||| || | |||||||| || || ||| | || ||||| |||||||| | ||||| |||||||||||||||||||| |||||||||| |||| |
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| T |
19326787 |
cttaatcactccaacacgtcccctattcttaccaccagtaaccataacgacgttcccaacatcaaatttgatgaaatcaacaatcttgttttcctccaga |
19326886 |
T |
|
| Q |
674 |
tctagtttgattgtgtcattggccttaataaggggatcaggatagcggattgtacgcccatcataggtgtt |
744 |
Q |
| |
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|| || ||||| |||||||| ||| | || | ||| || || || ||||| || || |||||||||||||| |
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|
| T |
19326887 |
tccagcttgatggtgtcattagccctgatgacggggtctgggtaacggatagtgcgaccatcataggtgtt |
19326957 |
T |
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