View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2584_low_24 (Length: 241)
Name: NF2584_low_24
Description: NF2584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2584_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 30859936 - 30860157
Alignment:
| Q |
1 |
atgcctagtgtatagtgtagacttaagagaattttgacattttcttgccttagaaggtgtttggaagagttaaatggagtttatcttatgacataatcaa |
100 |
Q |
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| T |
30859936 |
atgccaagtatatagtctagacttaagagaatttggacattttcttgtcgtagaaggtgtttggaagagttaaatggagtttatcttatgacataatcaa |
30860035 |
T |
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| Q |
101 |
ttatttagaagaccttacaaaaatggtttatatataacacatgccatgtttgttttcatttttaattagatggtagaaaccaaggtagtcagagtcgaga |
200 |
Q |
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| T |
30860036 |
ttatttagaagaccttacaaaaatggtttatatataacacatgccatgtttgttttcatttttaattagatggtagaaaccaaggtagtcagagtcgaga |
30860135 |
T |
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| Q |
201 |
tcctgggcaagatcggggaggg |
222 |
Q |
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| T |
30860136 |
tcctgggcaagatcggggaggg |
30860157 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 222
Target Start/End: Complemental strand, 49309035 - 49308994
Alignment:
| Q |
181 |
caaggtagtcagagtcgagatcctgggcaagatcggggaggg |
222 |
Q |
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| T |
49309035 |
caaggtagtcagagtcgagatcgtaggcaagatcggagaggg |
49308994 |
T |
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