View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2584_low_25 (Length: 233)

Name: NF2584_low_25
Description: NF2584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2584_low_25
NF2584_low_25
[»] chr2 (7 HSPs)
chr2 (17-222)||(15654449-15654654)
chr2 (17-222)||(15645397-15645602)
chr2 (17-222)||(15624772-15624977)
chr2 (17-222)||(15493657-15493862)
chr2 (17-192)||(15601210-15601385)
chr2 (17-218)||(15517487-15517688)
chr2 (62-218)||(15534000-15534156)


Alignment Details
Target: chr2 (Bit Score: 177; Significance: 1e-95; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 17 - 222
Target Start/End: Complemental strand, 15654654 - 15654449
Alignment:
Q  17 agcatgaaacactaagagaaaatgcagagtcatggatgnnnnnnnctgccgagtcttgcatgctaatttcaactgtcattgctaccggagtgtttgctgc 116  Q
    ||||||||||||||||||||||||||||||| ||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15654654 agcatgaaacactaagagaaaatgcagagtcgtggatgaaaaaaactgccgagtcttgcatgctaatttcaactgtcattgctaccggagtgtttgctgc 15654555  T
Q  117 tgcaactactttaccaggcggtaccgatgactctggaaaaccacactatttgaataaaacatcattcttggtgttttcaatatcagatgcatctgcattc 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  15654554 tgcaactactttaccaggcggtaccgatgactctggaaaaccacactatttgaataaaacatcattcttggtgtttgcaatatcagatgcatctgcattc 15654455  T
Q  217 atctca 222  Q
    ||||||    
T  15654454 atctca 15654449  T

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Target: chr2; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 17 - 222
Target Start/End: Complemental strand, 15645602 - 15645397
Alignment:
Q  17 agcatgaaacactaagagaaaatgcagagtcatggatgnnnnnnnctgccgagtcttgcatgctaatttcaactgtcattgctaccggagtgtttgctgc 116  Q
    ||||||||||||||||||||||||||||||| ||||||       | |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15645602 agcatgaaacactaagagaaaatgcagagtcgtggatgaaaaaaacggccgagtcttgcatgctaatttcaactgtcattgctaccggagtgtttgctgc 15645503  T
Q  117 tgcaactactttaccaggcggtaccgatgactctggaaaaccacactatttgaataaaacatcattcttggtgttttcaatatcagatgcatctgcattc 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  15645502 tgcaactactttaccaggcggtaccgatgactctggaaaaccacactatttgaataaaacatcattcttggtgtttgcaatatcagatgcatctgcattc 15645403  T
Q  217 atctca 222  Q
    ||||||    
T  15645402 atctca 15645397  T

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Target: chr2; HSP #3
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 17 - 222
Target Start/End: Complemental strand, 15624977 - 15624772
Alignment:
Q  17 agcatgaaacactaagagaaaatgcagagtcatggatgnnnnnnnctgccgagtcttgcatgctaatttcaactgtcattgctaccggagtgtttgctgc 116  Q
    |||||||||||||||||||||| |||||||| ||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15624977 agcatgaaacactaagagaaaacgcagagtcgtggatgaaaaaaactgccgagtcttgcatgctaatttcaactgtcattgctaccggagtgtttgctgc 15624878  T
Q  117 tgcaactactttaccaggcggtaccgatgactctggaaaaccacactatttgaataaaacatcattcttggtgttttcaatatcagatgcatctgcattc 216  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  15624877 tgcaactactttaccaggcggtaccgatgattctggaaaaccacactatttgaataaaacatcattcttggtgtttgcaatatcagatgcatttgcattc 15624778  T
Q  217 atctca 222  Q
    ||||||    
T  15624777 atctca 15624772  T

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Target: chr2; HSP #4
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 17 - 222
Target Start/End: Complemental strand, 15493862 - 15493657
Alignment:
Q  17 agcatgaaacactaagagaaaatgcagagtcatggatgnnnnnnnctgccgagtcttgcatgctaatttcaactgtcattgctaccggagtgtttgctgc 116  Q
    ||||||||| |||||| ||| |||||||||| ||||||       ||||||||||||| |||||||||||||| ||||||||||| |||||||| |||||    
T  15493862 agcatgaaaaactaagggaagatgcagagtcttggatgaaaaaaactgccgagtcttgtatgctaatttcaacagtcattgctactggagtgttcgctgc 15493763  T
Q  117 tgcaactactttaccaggcggtaccgatgactctggaaaaccacactatttgaataaaacatcattcttggtgttttcaatatcagatgcatctgcattc 216  Q
    |||||||||||||||||| |||||||||||| | ||||||||| |||| ||||| ||| ||||||||||||||||| ||||||||||  ||| ||||||     
T  15493762 tgcaactactttaccaggtggtaccgatgacacaggaaaaccaaactacttgaagaaaccatcattcttggtgtttgcaatatcagacacatttgcattt 15493663  T
Q  217 atctca 222  Q
    ||||||    
T  15493662 atctca 15493657  T

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Target: chr2; HSP #5
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 17 - 192
Target Start/End: Complemental strand, 15601385 - 15601210
Alignment:
Q  17 agcatgaaacactaagagaaaatgcagagtcatggatgnnnnnnnctgccgagtcttgcatgctaatttcaactgtcattgctaccggagtgtttgctgc 116  Q
    ||||| ||| ||||||||||||||||||||||||||||       | || |||||||| |||||||||||| | ||||||||||||||||||||||||||    
T  15601385 agcatcaaaaactaagagaaaatgcagagtcatggatgaagaaaaccgcagagtcttgtatgctaatttcagccgtcattgctaccggagtgtttgctgc 15601286  T
Q  117 tgcaactactttaccaggcggtaccgatgactctggaaaaccacactatttgaataaaacatcattcttggtgttt 192  Q
    |||||||||| |||||||||||| ||||||| | ||||||||| | |||||||| ||| ||||||| |||||||||    
T  15601285 tgcaactactgtaccaggcggtatcgatgacacaggaaaaccaaattatttgaagaaaccatcatttttggtgttt 15601210  T

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Target: chr2; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 17 - 218
Target Start/End: Complemental strand, 15517688 - 15517487
Alignment:
Q  17 agcatgaaacactaagagaaaatgcagagtcatggatgnnnnnnnctgccgagtcttgcatgctaatttcaactgtcattgctaccggagtgtttgctgc 116  Q
    ||||||||| |||||| ||| |||||||||| ||||||       |||| ||||| || |||||||||||||| |||||||||||||||||||| |||||    
T  15517688 agcatgaaaaactaagggaagatgcagagtcttggatgaaaaaaactgcggagtcgtgtatgctaatttcaacagtcattgctaccggagtgttcgctgc 15517589  T
Q  117 tgcaactactttaccaggcggtaccgatgactctggaaaaccacactatttgaataaaacatcattcttggtgttttcaatatcagatgcatctgcattc 216  Q
    ||||  |||||||||||| |||| |||| || | ||||||||| ||| |||||| ||| ||||||| |||| |||| ||||||||||||||||||| |||    
T  15517588 tgcagttactttaccaggtggtatcgataacacaggaaaaccaaactttttgaagaaaccatcatttttggggtttgcaatatcagatgcatctgcgttc 15517489  T
Q  217 at 218  Q
    ||    
T  15517488 at 15517487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 62 - 218
Target Start/End: Complemental strand, 15534156 - 15534000
Alignment:
Q  62 ctgccgagtcttgcatgctaatttcaactgtcattgctaccggagtgtttgctgctgcaactactttaccaggcggtaccgatgactctggaaaaccaca 161  Q
    |||| ||||| || |||||||||||||| |||||||||||||||||||| |||||||||  |||||||||||| |||||||||||| | ||||||||| |    
T  15534156 ctgcggagtcatgtatgctaatttcaacagtcattgctaccggagtgttcgctgctgcagttactttaccaggtggtaccgatgacaccggaaaaccaaa 15534057  T
Q  162 ctatttgaataaaacatcattcttggtgttttcaatatcagatgcatctgcattcat 218  Q
    ||| ||||  |||||| |||||||||| ||| ||| |||||||||||||||||||||    
T  15534056 ctagttgacgaaaacaccattcttggtatttgcaacatcagatgcatctgcattcat 15534000  T

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