View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2584_low_28 (Length: 220)

Name: NF2584_low_28
Description: NF2584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2584_low_28
NF2584_low_28
[»] scaffold1315 (2 HSPs)
scaffold1315 (1-120)||(1754-1873)
scaffold1315 (165-199)||(1925-1959)
[»] scaffold1293 (2 HSPs)
scaffold1293 (1-120)||(198-317)
scaffold1293 (165-199)||(112-146)
[»] chr4 (8 HSPs)
chr4 (1-119)||(42756285-42756403)
chr4 (69-120)||(30023643-30023694)
chr4 (17-57)||(39976093-39976133)
chr4 (71-119)||(53261101-53261149)
chr4 (68-119)||(36273056-36273107)
chr4 (67-114)||(54223560-54223607)
chr4 (17-58)||(17449866-17449907)
chr4 (74-114)||(46321359-46321399)
[»] chr6 (6 HSPs)
chr6 (68-120)||(16193827-16193879)
chr6 (1-56)||(24360541-24360596)
chr6 (72-118)||(369519-369565)
chr6 (68-113)||(2543848-2543893)
chr6 (15-56)||(16275191-16275232)
chr6 (17-57)||(1600324-1600364)
[»] chr1 (6 HSPs)
chr1 (68-120)||(10449456-10449508)
chr1 (68-120)||(44938803-44938855)
chr1 (76-118)||(28810060-28810102)
chr1 (68-113)||(28739418-28739463)
chr1 (15-56)||(29997852-29997893)
chr1 (68-120)||(15928082-15928133)
[»] chr2 (4 HSPs)
chr2 (1-56)||(20443192-20443247)
chr2 (68-117)||(7755344-7755393)
chr2 (17-56)||(6467556-6467595)
chr2 (68-106)||(13421801-13421839)
[»] chr3 (10 HSPs)
chr3 (68-117)||(22894000-22894049)
chr3 (72-120)||(28309087-28309135)
chr3 (68-120)||(29081697-29081749)
chr3 (67-120)||(32385365-32385418)
chr3 (17-57)||(36097344-36097384)
chr3 (67-119)||(36738360-36738412)
chr3 (68-113)||(11512395-11512440)
chr3 (17-57)||(12745330-12745370)
chr3 (68-120)||(48342795-48342847)
chr3 (17-57)||(50331403-50331443)
[»] chr7 (5 HSPs)
chr7 (72-118)||(25099349-25099395)
chr7 (68-113)||(7211868-7211913)
chr7 (68-113)||(17272707-17272752)
chr7 (17-57)||(12978274-12978314)
chr7 (72-120)||(32315719-32315767)
[»] chr8 (4 HSPs)
chr8 (3-48)||(10900345-10900390)
chr8 (17-57)||(21587642-21587682)
chr8 (68-107)||(33763466-33763505)
chr8 (17-57)||(23141197-23141237)
[»] chr5 (4 HSPs)
chr5 (72-120)||(12605653-12605701)
chr5 (75-118)||(42772065-42772108)
chr5 (68-113)||(896277-896322)
chr5 (68-113)||(5215675-5215720)
[»] scaffold0110 (1 HSPs)
scaffold0110 (72-119)||(26512-26559)


Alignment Details
Target: scaffold1315 (Bit Score: 92; Significance: 7e-45; HSPs: 2)
Name: scaffold1315
Description:

Target: scaffold1315; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 1754 - 1873
Alignment:
Q  1 cataaatctccaagtgcttcaactaacccataaaattaccaataactcactatatttcggaaaacttttgggtgacattgtggttggtgactttgatcaa 100  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||  |||||||||||||||||||||||| ||||||||    
T  1754 cataaatctccaagtgcttcaactaacccgtaaaattaccaataactcactctattccggaaaacacttgggtgacattgtggttggtgacattgatcaa 1853  T
Q  101 ccacaatttcacaagtgtac 120  Q
    ||||||| ||||||||||||    
T  1854 ccacaatatcacaagtgtac 1873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1315; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 199
Target Start/End: Original strand, 1925 - 1959
Alignment:
Q  165 cttatgacattgtggtttccacggacaaaatacaa 199  Q
    |||||||||||||||||||||| ||||||||||||    
T  1925 cttatgacattgtggtttccactgacaaaatacaa 1959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1293 (Bit Score: 92; Significance: 7e-45; HSPs: 2)
Name: scaffold1293
Description:

Target: scaffold1293; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 317 - 198
Alignment:
Q  1 cataaatctccaagtgcttcaactaacccataaaattaccaataactcactatatttcggaaaacttttgggtgacattgtggttggtgactttgatcaa 100  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||  |||||||||||||||||||||||| ||||||||    
T  317 cataaatctccaagtgcttcaactaacccgtaaaattaccaataactcactctattccggaaaacacttgggtgacattgtggttggtgacattgatcaa 218  T
Q  101 ccacaatttcacaagtgtac 120  Q
    ||||||| ||||||||||||    
T  217 ccacaatatcacaagtgtac 198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1293; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 199
Target Start/End: Complemental strand, 146 - 112
Alignment:
Q  165 cttatgacattgtggtttccacggacaaaatacaa 199  Q
    |||||||||||||||||||||| ||||||||||||    
T  146 cttatgacattgtggtttccactgacaaaatacaa 112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 83; Significance: 2e-39; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 42756403 - 42756285
Alignment:
Q  1 cataaatctccaagtgcttcaactaacccataaaattaccaataactcactatatttcggaaaacttttgggtgacattgtggttggtgactttgatcaa 100  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||| ||||||||  ||| |||||||||||||||||||||||||||||    
T  42756403 cataaatctccaagtgcttcaactaacccgtaaaattaccaataagtcactctattccggaaaacacttgagtgacattgtggttggtgactttgatcaa 42756304  T
Q  101 ccacaatttcacaagtgta 119  Q
    |||||||  ||||||||||    
T  42756303 ccacaatgccacaagtgta 42756285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 69 - 120
Target Start/End: Complemental strand, 30023694 - 30023643
Alignment:
Q  69 tgggtgacattgtggttggtgactttgatcaaccacaatttcacaagtgtac 120  Q
    ||||||||||||||||||||||| |||| |||||||||| ||||||||||||    
T  30023694 tgggtgacattgtggttggtgacattgaccaaccacaatgtcacaagtgtac 30023643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 39976093 - 39976133
Alignment:
Q  17 cttcaactaacccataaaattaccaataactcactatattt 57  Q
    |||||||||| |||||||||||||||||||||||| |||||    
T  39976093 cttcaactaaaccataaaattaccaataactcactttattt 39976133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 53261101 - 53261149
Alignment:
Q  71 ggtgacattgtggttggtgactttgatcaaccacaatttcacaagtgta 119  Q
    ||||||||||||||||||||| |||| |||||||||| ||||| |||||    
T  53261101 ggtgacattgtggttggtgacattgaccaaccacaatgtcacatgtgta 53261149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 119
Target Start/End: Complemental strand, 36273107 - 36273056
Alignment:
Q  68 ttgggtgacattgtggttggtgactttgatcaaccacaatttcacaagtgta 119  Q
    ||||||||||||||||| |||||  |||| |||||||||| |||||||||||    
T  36273107 ttgggtgacattgtggtcggtgatattgaccaaccacaatatcacaagtgta 36273056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 114
Target Start/End: Original strand, 54223560 - 54223607
Alignment:
Q  67 tttgggtgacattgtggttggtgactttgatcaaccacaatttcacaa 114  Q
    ||||| ||||||||||||||||||| |||| |||||||||| ||||||    
T  54223560 tttggatgacattgtggttggtgacattgaccaaccacaatgtcacaa 54223607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 17449866 - 17449907
Alignment:
Q  17 cttcaactaacccataaaattaccaataactcactatatttc 58  Q
    ||||||| ||||||||||||||||||||| ||||||| ||||    
T  17449866 cttcaacaaacccataaaattaccaataattcactatgtttc 17449907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 114
Target Start/End: Original strand, 46321359 - 46321399
Alignment:
Q  74 gacattgtggttggtgactttgatcaaccacaatttcacaa 114  Q
    |||||||||||||||||| |||||| |||||||| ||||||    
T  46321359 gacattgtggttggtgacattgatcgaccacaatgtcacaa 46321399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 68 - 120
Target Start/End: Complemental strand, 16193879 - 16193827
Alignment:
Q  68 ttgggtgacattgtggttggtgactttgatcaaccacaatttcacaagtgtac 120  Q
    |||||||||||||||||||||||| ||| ||||||||||| ||||||||||||    
T  16193879 ttgggtgacattgtggttggtgacattggtcaaccacaatgtcacaagtgtac 16193827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 24360596 - 24360541
Alignment:
Q  1 cataaatctccaagtgcttcaactaacccataaaattaccaataactcactatatt 56  Q
    ||||||||||||||||||||||||| ||  ||||||||||||||||||||| ||||    
T  24360596 cataaatctccaagtgcttcaactacccagtaaaattaccaataactcactttatt 24360541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 72 - 118
Target Start/End: Complemental strand, 369565 - 369519
Alignment:
Q  72 gtgacattgtggttggtgactttgatcaaccacaatttcacaagtgt 118  Q
    |||||||||||||||||||| |||| |||||||||| ||||||||||    
T  369565 gtgacattgtggttggtgacattgaccaaccacaatgtcacaagtgt 369519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 68 - 113
Target Start/End: Complemental strand, 2543893 - 2543848
Alignment:
Q  68 ttgggtgacattgtggttggtgactttgatcaaccacaatttcaca 113  Q
    |||||||||||||||||||||||| |||  |||||||||| |||||    
T  2543893 ttgggtgacattgtggttggtgacattggccaaccacaatgtcaca 2543848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 15 - 56
Target Start/End: Complemental strand, 16275232 - 16275191
Alignment:
Q  15 tgcttcaactaacccataaaattaccaataactcactatatt 56  Q
    |||||||| ||||||||||||||| |||||||||||| ||||    
T  16275232 tgcttcaattaacccataaaattatcaataactcactctatt 16275191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 1600324 - 1600364
Alignment:
Q  17 cttcaactaacccataaaattaccaataactcactatattt 57  Q
    |||||||||| ||||||||||||||||||||| || |||||    
T  1600324 cttcaactaaaccataaaattaccaataactcgctctattt 1600364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 68 - 120
Target Start/End: Original strand, 10449456 - 10449508
Alignment:
Q  68 ttgggtgacattgtggttggtgactttgatcaaccacaatttcacaagtgtac 120  Q
    |||||||||||||||||||||||| |||| |||||||||| ||||||||||||    
T  10449456 ttgggtgacattgtggttggtgacattgaccaaccacaatgtcacaagtgtac 10449508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 120
Target Start/End: Original strand, 44938803 - 44938855
Alignment:
Q  68 ttgggtgacattgtggttggtgactttgatcaaccacaatttcacaagtgtac 120  Q
    |||||||||||||||||| ||||| |||| |||||| ||| ||||||||||||    
T  44938803 ttgggtgacattgtggttagtgacattgaccaaccagaatgtcacaagtgtac 44938855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 118
Target Start/End: Complemental strand, 28810102 - 28810060
Alignment:
Q  76 cattgtggttggtgactttgatcaaccacaatttcacaagtgt 118  Q
    |||||||||||||||| ||| ||||||||||| ||||||||||    
T  28810102 cattgtggttggtgacattggtcaaccacaatgtcacaagtgt 28810060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 68 - 113
Target Start/End: Complemental strand, 28739463 - 28739418
Alignment:
Q  68 ttgggtgacattgtggttggtgactttgatcaaccacaatttcaca 113  Q
    |||||||||||||||||||||||| |||  |||||||||| |||||    
T  28739463 ttgggtgacattgtggttggtgacattggccaaccacaatgtcaca 28739418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 15 - 56
Target Start/End: Complemental strand, 29997893 - 29997852
Alignment:
Q  15 tgcttcaactaacccataaaattaccaataactcactatatt 56  Q
    |||||||| ||||||||||||||| |||||||||||| ||||    
T  29997893 tgcttcaattaacccataaaattatcaataactcactctatt 29997852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 120
Target Start/End: Original strand, 15928082 - 15928133
Alignment:
Q  68 ttgggtgacattgtggttggtgactttgatcaaccacaatttcacaagtgtac 120  Q
    ||||||||||||||| |||||||| || |||||||||||| | ||||||||||    
T  15928082 ttgggtgacattgtgattggtgacatt-atcaaccacaatgttacaagtgtac 15928133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 20443192 - 20443247
Alignment:
Q  1 cataaatctccaagtgcttcaactaacccataaaattaccaataactcactatatt 56  Q
    ||||||||||||||||||||||||| ||  ||||||||||||||||||||| ||||    
T  20443192 cataaatctccaagtgcttcaactacccagtaaaattaccaataactcactttatt 20443247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 68 - 117
Target Start/End: Original strand, 7755344 - 7755393
Alignment:
Q  68 ttgggtgacattgtggttggtgactttgatcaaccacaatttcacaagtg 117  Q
    |||||||||||||||||||||||| |||  |||||||||| |||||||||    
T  7755344 ttgggtgacattgtggttggtgacattggccaaccacaatgtcacaagtg 7755393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 6467556 - 6467595
Alignment:
Q  17 cttcaactaacccataaaattaccaataactcactatatt 56  Q
    ||||||||||||||||||||||||||||||| ||| ||||    
T  6467556 cttcaactaacccataaaattaccaataactaactttatt 6467595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 106
Target Start/End: Complemental strand, 13421839 - 13421801
Alignment:
Q  68 ttgggtgacattgtggttggtgactttgatcaaccacaa 106  Q
    |||||||||||||||||||||||| |||| |||||||||    
T  13421839 ttgggtgacattgtggttggtgacattgaccaaccacaa 13421801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 68 - 117
Target Start/End: Complemental strand, 22894049 - 22894000
Alignment:
Q  68 ttgggtgacattgtggttggtgactttgatcaaccacaatttcacaagtg 117  Q
    |||||||||||||||||||||||| |||| |||||||||| |||||||||    
T  22894049 ttgggtgacattgtggttggtgacattgaccaaccacaatgtcacaagtg 22894000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 72 - 120
Target Start/End: Original strand, 28309087 - 28309135
Alignment:
Q  72 gtgacattgtggttggtgactttgatcaaccacaatttcacaagtgtac 120  Q
    ||||||||||||||| |||| ||||||||||||||| ||||||||||||    
T  28309087 gtgacattgtggttgatgacattgatcaaccacaatatcacaagtgtac 28309135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 68 - 120
Target Start/End: Complemental strand, 29081749 - 29081697
Alignment:
Q  68 ttgggtgacattgtggttggtgactttgatcaaccacaatttcacaagtgtac 120  Q
    |||||||| ||||||||||||||| ||| ||||||||||| ||||||||||||    
T  29081749 ttgggtgatattgtggttggtgacattggtcaaccacaatgtcacaagtgtac 29081697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 67 - 120
Target Start/End: Original strand, 32385365 - 32385418
Alignment:
Q  67 tttgggtgacattgtggttggtgactttgatcaaccacaatttcacaagtgtac 120  Q
    |||||||||||||||| |||||||| ||| ||||||||||| | ||||||||||    
T  32385365 tttgggtgacattgtgattggtgacattggtcaaccacaatgtgacaagtgtac 32385418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 36097344 - 36097384
Alignment:
Q  17 cttcaactaacccataaaattaccaataactcactatattt 57  Q
    |||||||||| |||||||||||||||||||||||| |||||    
T  36097344 cttcaactaaaccataaaattaccaataactcactttattt 36097384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 119
Target Start/End: Complemental strand, 36738412 - 36738360
Alignment:
Q  67 tttgggtgacattgtggttggtgactttgatcaaccacaatttcacaagtgta 119  Q
    ||||||||||||||||||||||||| ||| ||||| ||||| ||| |||||||    
T  36738412 tttgggtgacattgtggttggtgacattggtcaactacaatatcataagtgta 36738360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 68 - 113
Target Start/End: Original strand, 11512395 - 11512440
Alignment:
Q  68 ttgggtgacattgtggttggtgactttgatcaaccacaatttcaca 113  Q
    |||||||||||||||||||||||| |||  |||||||||| |||||    
T  11512395 ttgggtgacattgtggttggtgacattggccaaccacaatgtcaca 11512440  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 12745370 - 12745330
Alignment:
Q  17 cttcaactaacccataaaattaccaataactcactatattt 57  Q
    |||||||||| |||||||||||||||||| ||||| |||||    
T  12745370 cttcaactaagccataaaattaccaataattcactttattt 12745330  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 120
Target Start/End: Original strand, 48342795 - 48342847
Alignment:
Q  68 ttgggtgacattgtggttggtgactttgatcaaccacaatttcacaagtgtac 120  Q
    |||||||||||| ||||||| ||| ||| ||||||||||| |||||| |||||    
T  48342795 ttgggtgacattatggttggcgacattggtcaaccacaatgtcacaaatgtac 48342847  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 50331443 - 50331403
Alignment:
Q  17 cttcaactaacccataaaattaccaataactcactatattt 57  Q
    |||||||||| ||||||||||||||||||||| || |||||    
T  50331443 cttcaactaaaccataaaattaccaataactcgctctattt 50331403  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 72 - 118
Target Start/End: Complemental strand, 25099395 - 25099349
Alignment:
Q  72 gtgacattgtggttggtgactttgatcaaccacaatttcacaagtgt 118  Q
    |||| ||||||||||||||||||| ||||||||||| ||||||||||    
T  25099395 gtgaaattgtggttggtgactttggtcaaccacaatgtcacaagtgt 25099349  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 68 - 113
Target Start/End: Original strand, 7211868 - 7211913
Alignment:
Q  68 ttgggtgacattgtggttggtgactttgatcaaccacaatttcaca 113  Q
    |||||||||||||||||||||||| |||  |||||||||| |||||    
T  7211868 ttgggtgacattgtggttggtgacattggccaaccacaatgtcaca 7211913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 68 - 113
Target Start/End: Original strand, 17272707 - 17272752
Alignment:
Q  68 ttgggtgacattgtggttggtgactttgatcaaccacaatttcaca 113  Q
    |||||||||||||||||||||||| |||  |||||||||| |||||    
T  17272707 ttgggtgacattgtggttggtgacattggccaaccacaatgtcaca 17272752  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 12978274 - 12978314
Alignment:
Q  17 cttcaactaacccataaaattaccaataactcactatattt 57  Q
    |||||||||| ||||||||||||||||||||| || |||||    
T  12978274 cttcaactaaaccataaaattaccaataactcgctctattt 12978314  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 120
Target Start/End: Original strand, 32315719 - 32315767
Alignment:
Q  72 gtgacattgtggttggtgactttgatcaaccacaatttcacaagtgtac 120  Q
    |||||||||||||||||||| |||  |||||||||| |||||| |||||    
T  32315719 gtgacattgtggttggtgacattggccaaccacaatgtcacaattgtac 32315767  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 48
Target Start/End: Complemental strand, 10900390 - 10900345
Alignment:
Q  3 taaatctccaagtgcttcaactaacccataaaattaccaataactc 48  Q
    ||||||||||| |||| ||||||| |||||||||||||||||||||    
T  10900390 taaatctccaactgctacaactaaaccataaaattaccaataactc 10900345  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 21587682 - 21587642
Alignment:
Q  17 cttcaactaacccataaaattaccaataactcactatattt 57  Q
    |||||||||| |||||||||||||||||||||||| |||||    
T  21587682 cttcaactaaaccataaaattaccaataactcactttattt 21587642  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 107
Target Start/End: Original strand, 33763466 - 33763505
Alignment:
Q  68 ttgggtgacattgtggttggtgactttgatcaaccacaat 107  Q
    |||||||||||||||||||||||| ||| |||||||||||    
T  33763466 ttgggtgacattgtggttggtgacattggtcaaccacaat 33763505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 23141237 - 23141197
Alignment:
Q  17 cttcaactaacccataaaattaccaataactcactatattt 57  Q
    |||||||||| ||||||||||||||||||||| || |||||    
T  23141237 cttcaactaaaccataaaattaccaataactcgctctattt 23141197  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 120
Target Start/End: Complemental strand, 12605701 - 12605653
Alignment:
Q  72 gtgacattgtggttggtgactttgatcaaccacaatttcacaagtgtac 120  Q
    |||||||||||||||||||| ||| ||||||||||| ||||| ||||||    
T  12605701 gtgacattgtggttggtgacattggtcaaccacaatgtcacacgtgtac 12605653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 118
Target Start/End: Complemental strand, 42772108 - 42772065
Alignment:
Q  75 acattgtggttggtgactttgatcaaccacaatttcacaagtgt 118  Q
    ||||||||||||||||| |||| |||||||||| ||||||||||    
T  42772108 acattgtggttggtgacattgaccaaccacaatgtcacaagtgt 42772065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 68 - 113
Target Start/End: Original strand, 896277 - 896322
Alignment:
Q  68 ttgggtgacattgtggttggtgactttgatcaaccacaatttcaca 113  Q
    |||||||| ||||||||||||||  ||||||||||||||| |||||    
T  896277 ttgggtgagattgtggttggtgatattgatcaaccacaatgtcaca 896322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 68 - 113
Target Start/End: Complemental strand, 5215720 - 5215675
Alignment:
Q  68 ttgggtgacattgtggttggtgactttgatcaaccacaatttcaca 113  Q
    ||||||||||||||||||| |||| ||| ||||||||||| |||||    
T  5215720 ttgggtgacattgtggttgatgacattggtcaaccacaatatcaca 5215675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 119
Target Start/End: Original strand, 26512 - 26559
Alignment:
Q  72 gtgacattgtggttggtgactttgatcaaccacaatttcacaagtgta 119  Q
    |||||||||||||||||||| ||| |||| |||||| |||||||||||    
T  26512 gtgacattgtggttggtgacattggtcaaacacaatatcacaagtgta 26559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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