View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2584_low_5 (Length: 402)
Name: NF2584_low_5
Description: NF2584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2584_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 356; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 12 - 383
Target Start/End: Complemental strand, 34216658 - 34216287
Alignment:
| Q |
12 |
atgaatacaaaccagtagcaggatcttgtgtatccctccaagataccaaacctttataatcaccattcactaagttttttctaattctcatacctgggag |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||| |
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| T |
34216658 |
atgaatacaaaccagtagcaggatcttgtgtatccctccaagataccaaacctttataatcaccatttactaagtttgttctaatactcatacctgggag |
34216559 |
T |
|
| Q |
112 |
caaagtgtcaccaggaagatcaaaactttgccacaaaattttatccgggtcgatttcatcttttacaataagatttccactttccaagagctgcaaactt |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34216558 |
caaagtgtcaccaggaagatcaaaactttgccacaaaattttatccgggtcgatttcatcttttacaataagatttccactttccaagagctgcaaactt |
34216459 |
T |
|
| Q |
212 |
ggttttgatgccgtcgttgatgtattagatgaccatatcgtaacctctttggaatcaacaataacaagagttcctttatctgtgagattcaaaactcctg |
311 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34216458 |
ggttttgatgtcgtcgttgatgtattagatgaccatatcgtaacctctttggaatcaacaataacaagagttcctttatctgtgagattcaaaactcctg |
34216359 |
T |
|
| Q |
312 |
atgagtttcctagtggaacatctcggtttgctatccaaacaagagtctttggtgaaatattcttgtaccata |
383 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34216358 |
atgagtttcctagtggaacatctcggtttgctatccaaacaagagtctttggtgaaatattcttgtaccata |
34216287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 12 - 384
Target Start/End: Original strand, 34194918 - 34195290
Alignment:
| Q |
12 |
atgaatacaaaccagtagcaggatcttgtgtatccctccaagataccaaacctttataatcaccattcactaagttttttctaattctcatacctgggag |
111 |
Q |
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|||||||||||||||||||||||||||| || || | |||||||||||||| | |||||| ||| | | |||||| ||||||||||||||||||| | |
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| T |
34194918 |
atgaatacaaaccagtagcaggatcttgcgtgtctcgccaagataccaaacttgtataatttccagttaataagttacttctaattctcatacctggaat |
34195017 |
T |
|
| Q |
112 |
caaagtgtcaccaggaagatcaaaactttgccacaaaattttatccgggtcgatttcatcttttacaataagatttccactttccaagagctgcaaactt |
211 |
Q |
| |
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|||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |
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| T |
34195018 |
caaagtatcactaggaagatcaaaactttgccacaaaattttatccgggtcgatttcatcttttacaactagatttccagtttccaagagctgcaaactt |
34195117 |
T |
|
| Q |
212 |
ggttttgatgccgtcgttgatgtattagatgaccatatcgtaacctctttggaatcaacaataacaagagttcctttatctgtgagattcaaaactcctg |
311 |
Q |
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|||||| ||| || |||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |
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| T |
34195118 |
ggttttactgctgttgttgatgtattagatgaccatatcataacctctttggaatcgacaataacaagagttcctttatctgtaagattcaaaactcctg |
34195217 |
T |
|
| Q |
312 |
atgagtttcctagtggaacatctcggtttgctatccaaacaagagtctttggtgaaatattcttgtaccatat |
384 |
Q |
| |
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|||||||||||| ||||||||||| ||||||||||| ||| |||| ||||||||||| | ||||||||||| |
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|
| T |
34195218 |
atgagtttcctaatggaacatctctatttgctatccacacaggagtttttggtgaaatgtctttgtaccatat |
34195290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 12 - 383
Target Start/End: Complemental strand, 34205233 - 34204862
Alignment:
| Q |
12 |
atgaatacaaaccagtagcaggatcttgtgtatccctccaagataccaaacctttataatcaccattcactaagttttttctaattctcatacctgggag |
111 |
Q |
| |
|
||||||| |||||||||| |||||| |||||||| ||||||||||||||||||||| ||||||||| |||||||| |||| ||| ||||||||||||| |
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| T |
34205233 |
atgaatataaaccagtagaaggatcatgtgtatctctccaagataccaaacctttaatatcaccatttactaagttgcttctgattttcatacctgggag |
34205134 |
T |
|
| Q |
112 |
caaagtgtcaccaggaagatcaaaactttgccacaaaattttatccgggtcgatttcatcttttacaataagatttccactttccaagagctgcaaactt |
211 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |||||| ||| | |||||||||| |||| || || ||||| ||||||| ||||| | || |
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| T |
34205133 |
taaagtgtcaccaggtttatcaaaactttgccacaaaaatttatcttggttggtttcatctttcacaactaggttaccactatccaagacctgcacagtt |
34205034 |
T |
|
| Q |
212 |
ggttttgatgccgtcgttgatgtattagatgaccatatcgtaacctctttggaatcaacaataacaagagttcctttatctgtgagattcaaaactcctg |
311 |
Q |
| |
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||||||| | || ||||| |||||||| ||||||||| || || |||||||||||||||||||||| |||||||||| || | ||| ||||||||| |
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| T |
34205033 |
ggttttgcatctgttgttgaggtattagaggaccatatcatagcccctttggaatcaacaataacaaggtttcctttatcagttacattaaaaactccta |
34204934 |
T |
|
| Q |
312 |
atgagtttcctagtggaacatctcggtttgctatccaaacaagagtctttggtgaaatattcttgtaccata |
383 |
Q |
| |
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|||||||||||| |||| ||||| ||||||||||| |||| ||| |||||||||||| ||||||||||| |
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| T |
34204933 |
atgagtttcctaatggagaatctctatttgctatccacacaacagttattggtgaaatatccttgtaccata |
34204862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 79; Significance: 8e-37; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 258 - 384
Target Start/End: Original strand, 25265566 - 25265692
Alignment:
| Q |
258 |
ctttggaatcaacaataacaagagttcctttatctgtgagattcaaaactcctgatgagtttcctagtggaacatctcggtttgctatccaaacaagagt |
357 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||| |||| ||||||||||| |||||||| |
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| T |
25265566 |
ctttggaatcaacaataacaagagttcatttatttgtgagattcaaaactcctgatgagtttcctaatggaatgtctctatttgctatccacacaagagt |
25265665 |
T |
|
| Q |
358 |
ctttggtgaaatattcttgtaccatat |
384 |
Q |
| |
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||||||||||| | ||||||||||| |
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| T |
25265666 |
ttttggtgaaatgtctttgtaccatat |
25265692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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