View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2584_low_7 (Length: 388)
Name: NF2584_low_7
Description: NF2584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2584_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 22 - 350
Target Start/End: Complemental strand, 35125932 - 35125586
Alignment:
| Q |
22 |
ggccttaatctaaactaaggaataaagcactcaatcatgttatgaagcatatacactatgaggatgaaaacactaactatatctgccttggtccagttaa |
121 |
Q |
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| T |
35125932 |
ggccttactctaaactaaggaataaagcactcaatcatgttatgaagcatatacactatgaggatgaaaacactaactatatctgccttggtccagttaa |
35125833 |
T |
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| Q |
122 |
taaggtggttaattatatatcattattatgtgctagctgctatgaagcacggacattccttggattccttggattaggtgtgtcttgatgtcatacatgt |
221 |
Q |
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| T |
35125832 |
taaggtggttaattatatatcattattatgtgctagctgctatcaagcacggacattctttgaatttcttagattaggtgtgtcttgatgtcatacatgt |
35125733 |
T |
|
| Q |
222 |
gtcc--ttggattcc---------ttgacacttataattacagtaacatatgtgannnnnnnaaattatcaacggtgtcggcgtgtctgtgtttgtgttg |
310 |
Q |
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| T |
35125732 |
gtcctgtccgacaccggcacgacaatgacacttataattacagtaaaatatgtgatttttttaaattatcaacggtgtcggcgtgtctgtgtttgtgttg |
35125633 |
T |
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| Q |
311 |
tgtcc-------gtatccgtacttcataggtagctgtaaatatcata |
350 |
Q |
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| T |
35125632 |
tgtccggtgtcagtatccgtacttcataggtagctgtaaatatcata |
35125586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 22 - 350
Target Start/End: Original strand, 33340175 - 33340512
Alignment:
| Q |
22 |
ggccttaatctaaactaaggaataaagcactcaatcatgttatgaagcatatacactatgaggatgaaaacactaactatatctgccttggtccagttaa |
121 |
Q |
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| T |
33340175 |
ggccttactctaaactaaggaataaagcactcaatcatgttatgaagcatatacactatgaggatgaaaacactaactatatctgccttggtccagttaa |
33340274 |
T |
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| Q |
122 |
taaggtggttaattatatatcattattatgtgctagctgctatgaagcacggacattccttggattccttggattaggtgtgtcttgatgtcatacatgt |
221 |
Q |
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| T |
33340275 |
taaggtggttaattatatatcattatta---------tgctatgaagcacggacattccttggattccttggattaggtctgtcttgatgtcatacatgt |
33340365 |
T |
|
| Q |
222 |
gtcc--ttggattcc---------ttgacacttataattacagtaacatatgtgannnnnnnaaattatcaacggtgtcggcgtgtctgtgtttgtgttg |
310 |
Q |
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| T |
33340366 |
gtcctgtccgacaccggcacgacaatgacacttataattacagtaaaatatgtgatttttttaaattatcaacggtgtcggcgtgtctgtgtttgtgttg |
33340465 |
T |
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| Q |
311 |
tgtcc-------gtatccgtacttcataggtagctgtaaatatcata |
350 |
Q |
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| T |
33340466 |
tgtccggtgtctgtatccgtacttcataggtagctgtaaatatcata |
33340512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 331
Target Start/End: Original strand, 32320712 - 32320770
Alignment:
| Q |
273 |
aaattatcaacggtgtcggcgtgtctgtgtttgtgttgtgtccgtatccgtacttcata |
331 |
Q |
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| T |
32320712 |
aaattattaacggtgtcagcgtatcagtgctcgtgttgtgtccgtatccgtatttcata |
32320770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 37 - 127
Target Start/End: Original strand, 22506009 - 22506099
Alignment:
| Q |
37 |
taaggaataaagcactcaatcatgttatgaagcatatacactatgaggatgaaaacactaactatatctgccttggtccagttaataaggt |
127 |
Q |
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| T |
22506009 |
taaggaataaagcacttgatcacgttatgaagcatatacactatgaggatcaaaacactaactacatttgccttggtcccgtgaataaggt |
22506099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 285 - 334
Target Start/End: Original strand, 14359576 - 14359625
Alignment:
| Q |
285 |
gtgtcggcgtgtctgtgtttgtgttgtgtccgtatccgtacttcataggt |
334 |
Q |
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||||||||||||| |||| ||||| |||||||||||||| |||||||||| |
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| T |
14359576 |
gtgtcggcgtgtccgtgtctgtgtcgtgtccgtatccgtgcttcataggt |
14359625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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