View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2584_low_8 (Length: 362)

Name: NF2584_low_8
Description: NF2584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2584_low_8
NF2584_low_8
[»] chr8 (12 HSPs)
chr8 (1-361)||(15722572-15722932)
chr8 (153-361)||(15697362-15697569)
chr8 (194-361)||(15799869-15800036)
chr8 (189-362)||(15813250-15813423)
chr8 (201-361)||(15764420-15764580)
chr8 (201-361)||(15805401-15805561)
chr8 (159-361)||(15703741-15703940)
chr8 (273-361)||(15712030-15712118)
chr8 (5-55)||(15800279-15800329)
chr8 (5-60)||(15813712-15813767)
chr8 (5-63)||(15697843-15697901)
chr8 (5-57)||(15704236-15704288)
[»] chr3 (1 HSPs)
chr3 (216-362)||(4548030-4548176)


Alignment Details
Target: chr8 (Bit Score: 337; Significance: 0; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 361
Target Start/End: Complemental strand, 15722932 - 15722572
Alignment:
Q  1 atattagtatatgagtacatgccaaattcaagtcttgactttcatcttttcagtaagttttgaaaatcctaatgattagaatctacttttatacttgctc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15722932 atattagtatatgagtacatgccaaattcaagtcttgactttcatcttttcagtaagttttgaaaatcctaatgattagaatctacttttatacttgctc 15722833  T
Q  101 caatttagggctagcatttttctatatgtatagcactagcggtgcgtatctgttttcctcaataacatgaatgcaatgttcattttgattggtagatgaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15722832 caatttagggctagcatttttctatatgtatagcactagcggtgcgtatctgttttcctcaataacatgaatgcaatgttcattttgattggtagatgaa 15722733  T
Q  201 gaaaaacataagcagctagattggaaattacaactaagcattgtcaatggaatcgcaagaggactacagtaccttcacgaggactctcgacttagagtca 300  Q
    |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| || ||||||||||||||||||||||    
T  15722732 gaaaaacataagcaactagattggaaattacaactaagcattgtaaatggaatcgcaagaggactacaatacctgcatgaggactctcgacttagagtca 15722633  T
Q  301 tccatcgagatctgaaagccagtaacgttcttctggacagtgaaatgaatccaaaaatatc 361  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  15722632 tccatcgagatctgaaagccagcaacgttcttctggacagtgaaatgaatccaaaaatatc 15722572  T

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Target: chr8; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 153 - 361
Target Start/End: Complemental strand, 15697569 - 15697362
Alignment:
Q  153 ttttcctcaataacatgaatgcaatgttcattttgattggtagatgaagaaaaacataagcagctagattggaaattacaactaagcattgtcaatggaa 252  Q
    |||||||||||||||||||| ||||||||||||  || | ||||||||||| | |||||| | |||||||||| ||||| |||||| ||| |||||||||    
T  15697569 ttttcctcaataacatgaatacaatgttcatttgcat-gttagatgaagaacagcataagaaactagattggacattacgactaagtattatcaatggaa 15697471  T
Q  253 tcgcaagaggactacagtaccttcacgaggactctcgacttagagtcatccatcgagatctgaaagccagtaacgttcttctggacagtgaaatgaatcc 352  Q
    |||||||||||||    ||||||||| | || |||||||||||||| |||||| |||||||||||||||| || |||||||||||   ||||||||||||    
T  15697470 tcgcaagaggacttttataccttcaccaagattctcgacttagagttatccatagagatctgaaagccagcaatgttcttctggatgatgaaatgaatcc 15697371  T
Q  353 aaaaatatc 361  Q
     ||||||||    
T  15697370 gaaaatatc 15697362  T

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Target: chr8; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 194 - 361
Target Start/End: Complemental strand, 15800036 - 15799869
Alignment:
Q  194 agatgaagaaaaacataagcagctagattggaaattacaactaagcattgtcaatggaatcgcaagaggactacagtaccttcacgaggactctcgactt 293  Q
    |||||| |||||||||||||| |||||||||||||||| |||||||||| |||||||||| ||||||||| | |  |||||||| ||||| |||||||||    
T  15800036 agatgaggaaaaacataagcatctagattggaaattacgactaagcattatcaatggaattgcaagaggattgctataccttcatgaggattctcgactt 15799937  T
Q  294 agagtcatccatcgagatctgaaagccagtaacgttcttctggacagtgaaatgaatccaaaaatatc 361  Q
    ||||| |||||  |||||||||||||||| || |||||||||||   |||||||||||||||||||||    
T  15799936 agagtaatccacagagatctgaaagccagcaatgttcttctggatgatgaaatgaatccaaaaatatc 15799869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 189 - 362
Target Start/End: Complemental strand, 15813423 - 15813250
Alignment:
Q  189 ttggtagatgaagaaaaacataagcagctagattggaaattacaactaagcattgtcaatggaatcgcaagaggactacagtaccttcacgaggactctc 288  Q
    |||| ||||||||||||||||||||| |||||||||||| ||| |||||||||| |||| ||||||||||||||||| |  |||||||| ||||| ||||    
T  15813423 ttggcagatgaagaaaaacataagcatctagattggaaactacgactaagcattatcaaaggaatcgcaagaggacttctataccttcatgaggattctc 15813324  T
Q  289 gacttagagtcatccatcgagatctgaaagccagtaacgttcttctggacagtgaaatgaatccaaaaatatct 362  Q
     ||||||||| |||||  ||||||||||||| || || |||||||||||   ||||||||||||||||||||||    
T  15813323 cacttagagtaatccacagagatctgaaagcgagcaatgttcttctggatgatgaaatgaatccaaaaatatct 15813250  T

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Target: chr8; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 201 - 361
Target Start/End: Complemental strand, 15764580 - 15764420
Alignment:
Q  201 gaaaaacataagcagctagattggaaattacaactaagcattgtcaatggaatcgcaagaggactacagtaccttcacgaggactctcgacttagagtca 300  Q
    ||||| |||||||| |||||||||| ||||| |||||||||||||| |||||| |||| |||||| |  |||||||| ||||| |||||||||||||| |    
T  15764580 gaaaagcataagcatctagattggagattacgactaagcattgtcactggaattgcaaaaggactgctataccttcatgaggattctcgacttagagtaa 15764481  T
Q  301 tccatcgagatctgaaagccagtaacgttcttctggacagtgaaatgaatccaaaaatatc 361  Q
    ||||  | ||||||||||| || || |||||||||||   |||||||||||||||||||||    
T  15764480 tccacagggatctgaaagctagcaatgttcttctggatgatgaaatgaatccaaaaatatc 15764420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 201 - 361
Target Start/End: Complemental strand, 15805561 - 15805401
Alignment:
Q  201 gaaaaacataagcagctagattggaaattacaactaagcattgtcaatggaatcgcaagaggactacagtaccttcacgaggactctcgacttagagtca 300  Q
    ||||| ||||||||  ||||||||| ||||| || ||||||| |||||||||| |||| |||||| |  |||||||| ||||| |||||||||||||| |    
T  15805561 gaaaagcataagcacatagattggagattacgacgaagcattatcaatggaattgcaaaaggactgctataccttcatgaggattctcgacttagagtaa 15805462  T
Q  301 tccatcgagatctgaaagccagtaacgttcttctggacagtgaaatgaatccaaaaatatc 361  Q
    ||||  |||||||||||||||| || |||||||| ||   |||||||||||||||||||||    
T  15805461 tccacagagatctgaaagccagcaatgttcttctagatgatgaaatgaatccaaaaatatc 15805401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 159 - 361
Target Start/End: Complemental strand, 15703940 - 15703741
Alignment:
Q  159 tcaataacatgaatgcaatgttcattttgattggtagatgaagaaaaacataagcagctagattggaaattacaactaagcattgtcaatggaatcgcaa 258  Q
    ||||||||| ||||  ||||||||||| |  ||| |||||| ||| | |||||||| || ||||||| ||||| | | || ||| ||||||||||| |      
T  15703940 tcaataacaagaataaaatgttcattt-gtgtggcagatgaggaatagcataagcaactcgattggacattacgattgagtattatcaatggaatcac-- 15703844  T
Q  259 gaggactacagtaccttcacgaggactctcgacttagagtcatccatcgagatctgaaagccagtaacgttcttctggacagtgaaatgaatccaaaaat 358  Q
    |||||||    ||||||||| |||| |||||||||||||| |||||| |||| || |||||| | ||||||||||| ||   ||||||||||||||||||    
T  15703843 gaggacttttataccttcaccaggattctcgacttagagttatccatagagaccttaaagcctgcaacgttcttctagatgatgaaatgaatccaaaaat 15703744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 273 - 361
Target Start/End: Complemental strand, 15712118 - 15712030
Alignment:
Q  273 cttcacgaggactctcgacttagagtcatccatcgagatctgaaagccagtaacgttcttctggacagtgaaatgaatccaaaaatatc 361  Q
    ||||||||||| |||||||||||||| |||||| ||||| ||||||| || || || ||| |||||  |||||||||||||||||||||    
T  15712118 cttcacgaggattctcgacttagagttatccatagagatatgaaagcaagcaatgtacttttggacgatgaaatgaatccaaaaatatc 15712030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 5 - 55
Target Start/End: Complemental strand, 15800329 - 15800279
Alignment:
Q  5 tagtatatgagtacatgccaaattcaagtcttgactttcatcttttcagta 55  Q
    ||||||||||||||||||| |||||||| ||||||||||| ||||||||||    
T  15800329 tagtatatgagtacatgccgaattcaagccttgactttcaccttttcagta 15800279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 60
Target Start/End: Complemental strand, 15813767 - 15813712
Alignment:
Q  5 tagtatatgagtacatgccaaattcaagtcttgactttcatcttttcagtaagttt 60  Q
    ||||||||||||| |||||||||||||| ||| ||||||| |||||||||| ||||    
T  15813767 tagtatatgagtatatgccaaattcaagccttaactttcaccttttcagtatgttt 15813712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 63
Target Start/End: Complemental strand, 15697901 - 15697843
Alignment:
Q  5 tagtatatgagtacatgccaaattcaagtcttgactttcatcttttcagtaagttttga 63  Q
    |||||||||| |||||||| |||||||| ||||||||||| |||||| ||| |||||||    
T  15697901 tagtatatgaatacatgccgaattcaagccttgactttcaccttttcggtatgttttga 15697843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 15704288 - 15704236
Alignment:
Q  5 tagtatatgagtacatgccaaattcaagtcttgactttcatcttttcagtaag 57  Q
    |||||||||| || | |||||||||||| ||||||||||| ||||||||||||    
T  15704288 tagtatatgactataagccaaattcaagccttgactttcaccttttcagtaag 15704236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 362
Target Start/End: Complemental strand, 4548176 - 4548030
Alignment:
Q  216 ctagattggaaattacaactaagcattgtcaatggaatcgcaagaggactacagtaccttcacgaggactctcgacttagagtcatccatcgagatctga 315  Q
    ||||||||||| |||  ||||| |||| | |||||||| |||| ||||||   ||| ||||| || |||||| |||||||||| |||||| |||| || |    
T  4548176 ctagattggaacttaagactaaacattattaatggaattgcaaaaggactcttgtatcttcatgaagactctagacttagagtaatccatagagacctaa 4548077  T
Q  316 aagccagtaacgttcttctggacagtgaaatgaatccaaaaatatct 362  Q
    |||| ||||| |||||| | ||    || ||||||||||||||||||    
T  4548076 aagcaagtaatgttcttttagatcaagagatgaatccaaaaatatct 4548030  T

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