View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2585_high_1 (Length: 694)

Name: NF2585_high_1
Description: NF2585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2585_high_1
NF2585_high_1
[»] chr8 (1 HSPs)
chr8 (18-683)||(38770991-38771643)


Alignment Details
Target: chr8 (Bit Score: 565; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 565; E-Value: 0
Query Start/End: Original strand, 18 - 683
Target Start/End: Original strand, 38770991 - 38771643
Alignment:
Q  18 aaaaccacttcaatcactttctcctcagccggaggaaccaccacattttcaatgtgaatagtctcagatgatttttctagtttgattggttcgttcaact 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||               ||||||||||||||||||||||||||||||||||||||||    
T  38770991 aaaaccacttcaatcactttctcctcagccggaggaaccaccaca---------------gtctcagatgatttttctagtttgattggttcgttcaact 38771075  T
Q  118 cattgctttttgtttcagcttctgctgtttctatattcacctcagctgcaacatcatttttattttgtttcacaacagttggttcattgattttactagt 217  Q
    |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  38771076 cattgctttttgtttcagcttctggtgtttctatcttcacctcagctgcaacatcatttttattttgtttcacaacagctggttcattgattttactagt 38771175  T
Q  218 ttcttgtgaagttttcttagcttcttcatgtgtttctgtcttcacaatctcttcagctgctgaatcagtgattttattttgcaatgaaggtttttcctca 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38771176 ttcttgtgaagttttcttagcttcttcatgtgtttctgtcttcacaatctcttcagctgctgaatcagtgattttattttgcaatgaaggtttttcctca 38771275  T
Q  318 acaactgcacattcttgttcagtagatggttcattg-tttttggtttcctgagatggtttttccaatgttggctcgttgcttttagcatcctccaaaggt 416  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38771276 acaactgcacattcttgttcagtagatggttcattgttttttggtttcctgagatggtttttccaatgttggctcgttgcttttagcatcctccaaaggt 38771375  T
Q  417 ttctctgtttccaatgtttcttctttcacagtttcctcagctttg-nnnnnnncattttcagtggaatcctttgcatcttcattctatacatggatagaa 515  Q
    |||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||    
T  38771376 ttctctgtttccaatgtttcttctttcacagtttcctcagctttgttttttttcattttcagtggaatcctttgcatcttcattctatacatggatagaa 38771475  T
Q  516 tttgtgtgagaatgttaattgtttgtcaaatcaacaaaaagctaaatgatatttcattttctttctaaatcatcaaatcaagagtttgaaccttgtgaat 615  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38771476 tttgtgtgagaatgttaattgtttgtcaaatcaacaaaaagctaaatgatatttcattttctttctaaatcatcaaatcaagagtttgaaccttgtgaat 38771575  T
Q  616 gaaacaaatgcagttgggagaggaaacccattaaaggcgatgaagccgatggatacttcatagttcat 683  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38771576 gaaacaaatgtagttgggagaggaaacccattaaaggcgatgaagccgatggatacttcatagttcat 38771643  T

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