View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2585_high_12 (Length: 535)

Name: NF2585_high_12
Description: NF2585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2585_high_12
NF2585_high_12
[»] chr4 (13 HSPs)
chr4 (1-401)||(23408328-23408728)
chr4 (1-186)||(23415712-23415897)
chr4 (1-185)||(23453376-23453560)
chr4 (1-185)||(23885917-23886101)
chr4 (1-185)||(23402164-23402348)
chr4 (1-185)||(23868822-23869006)
chr4 (1-185)||(24307313-24307497)
chr4 (1-185)||(26434114-26434298)
chr4 (1-185)||(26832825-26833009)
chr4 (1-185)||(26435894-26436078)
chr4 (1-185)||(34662045-34662229)
chr4 (1-133)||(23451788-23451920)
chr4 (436-522)||(23408240-23408326)
[»] chr1 (6 HSPs)
chr1 (60-174)||(33216594-33216708)
chr1 (2-162)||(41670491-41670651)
chr1 (1-182)||(40795859-40796040)
chr1 (1-162)||(29391556-29391717)
chr1 (107-185)||(45576399-45576477)
chr1 (4-40)||(33216558-33216594)
[»] chr7 (3 HSPs)
chr7 (60-183)||(47317431-47317554)
chr7 (59-162)||(40180297-40180400)
chr7 (4-40)||(47317395-47317431)
[»] chr2 (1 HSPs)
chr2 (95-147)||(14715433-14715485)


Alignment Details
Target: chr4 (Bit Score: 373; Significance: 0; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 1 - 401
Target Start/End: Complemental strand, 23408728 - 23408328
Alignment:
Q  1 tttcatcaatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||     
T  23408728 tttcatcaatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagaccgcg 23408629  T
Q  101 gtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttagacatttcgtttatgtt 200  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||    
T  23408628 gtcagacttgttcttcctggagaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttactagctcttagacatttcgattatgtt 23408529  T
Q  201 tattggtttcttagtgttttaattttctgagttgtaatgaactaatgggatctgttgatgtcttttgtgtaagaaatggagttaatgatatttgacttga 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  23408528 tattggtttcttagtgttttaattttctgagttgtaatgaactaatgggatctgttgatgtcttttgtgtaagaaatggagttaatgatatttgacatga 23408429  T
Q  301 aaattgcttgtagaattgggtttctctctgttttgaatgattgatctaggggtatcaaagactgaatacattttctcataaaatatagttggattcctcc 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  23408428 aaattgcttgtagaattgggtttctctctgttttgaatgattgatctaggggtatcaaagacggaatacattttctcataaaatatagttggattcctcc 23408329  T
Q  401 t 401  Q
    |    
T  23408328 t 23408328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 23415897 - 23415712
Alignment:
Q  1 tttcatcaatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23415897 tttcatcaatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgca 23415798  T
Q  101 gtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttagac 186  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||    
T  23415797 gtcagacttgttcttcctggtgaattggccaagcatgctgtttctgagggtaccaaggctgtgactaagtttactagctcttagac 23415712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 23453560 - 23453376
Alignment:
Q  1 tttcatcaatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23453560 tttcatcaatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgca 23453461  T
Q  101 gtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttaga 185  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||    
T  23453460 gtcagtcttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgaccaagtttactagttcttaga 23453376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 153; E-Value: 8e-81
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 23885917 - 23886101
Alignment:
Q  1 tttcatcaatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23885917 tttcatcaatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgca 23886016  T
Q  101 gtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttaga 185  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||| || ||||| |||||||| |||||||| || |||||||    
T  23886017 gtcaggcttgttcttcctggtgaattggccaagcatgctgtctctgagggaaccaaagctgtgaccaagtttactagttcttaga 23886101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 23402164 - 23402348
Alignment:
Q  1 tttcatcaatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23402164 tttcatcaatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgca 23402263  T
Q  101 gtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttaga 185  Q
    ||||| ||||||||||||||||||||||||||||||||||| || || || ||||| |||||||| |||||||| || |||||||    
T  23402264 gtcaggcttgttcttcctggtgaattggccaagcatgctgtctcagagggaaccaaagctgtgaccaagtttactagttcttaga 23402348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 23868822 - 23869006
Alignment:
Q  1 tttcatcaatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgca 100  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  23868822 tttcatcaatgatatcttcgagaaacttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgct 23868921  T
Q  101 gtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttaga 185  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||| || || |||||||||||||| || || |||||||    
T  23868922 gtcagacttgttcttcctggtgaattggccaaacatgctgtttctgaaggaacaaaagctgtgactaagttcactagttcttaga 23869006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 24307313 - 24307497
Alignment:
Q  1 tttcatcaatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgca 100  Q
    |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  24307313 tttcatcaatgatatcttcgagaaactagctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgct 24307412  T
Q  101 gtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttaga 185  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||| ||||| || || |||||||    
T  24307413 gtcagacttgttcttcctggtgaattggccaagcatgctgtttctgagggtaccaaagctgtgaccaagttcactagttcttaga 24307497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 26434114 - 26434298
Alignment:
Q  1 tttcatcaatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgca 100  Q
    |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||     
T  26434114 tttcatcaatgatatcttcgagaaactcgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagaccgcg 26434213  T
Q  101 gtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttaga 185  Q
    ||||| |||||||| || ||||||||||||||||||||||||||||| || ||||||||||| ||||||||||| || |||||||    
T  26434214 gtcaggcttgttctgcccggtgaattggccaagcatgctgtttctgagggtaccaaggctgtcactaagtttactagttcttaga 26434298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 26832825 - 26833009
Alignment:
Q  1 tttcatcaatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgca 100  Q
    |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||     
T  26832825 tttcatcaatgatatcttcgagaaactcgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagaccgcg 26832924  T
Q  101 gtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttaga 185  Q
    ||||| |||||||| || ||||||||||||||||||||||||||||| || ||||||||||| ||||||||||| || |||||||    
T  26832925 gtcaggcttgttctgcccggtgaattggccaagcatgctgtttctgagggtaccaaggctgtcactaagtttactagttcttaga 26833009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 26435894 - 26436078
Alignment:
Q  1 tttcatcaatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgca 100  Q
    |||||||||||||||||||||||| ||  |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||     
T  26435894 tttcatcaatgatatcttcgagaaactcactcaagaatcttccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagaccgcg 26435993  T
Q  101 gtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttaga 185  Q
    ||||| |||||||| || ||||||||||||||||||| ||||||||| || ||||||||||| ||||||||||| || |||||||    
T  26435994 gtcaggcttgttctgcccggtgaattggccaagcatgatgtttctgagggtaccaaggctgtcactaagtttaccagttcttaga 26436078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 34662229 - 34662045
Alignment:
Q  1 tttcatcaatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgca 100  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||||||||  | || ||||||||||| || || ||||| |||||||||||||||||     
T  34662229 tttcatcaatgatatcttcgagaagctcgctcaagaatcttccagacttgcaaggtataacaagaagccgacgataacttcgagggaaattcagactgct 34662130  T
Q  101 gtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttaga 185  Q
    || || |||||||||||||| |||||||| ||||||||||| ||||| || ||||| ||||| || ||||||||||| |||||||    
T  34662129 gttaggcttgttcttcctggagaattggctaagcatgctgtgtctgagggtaccaaagctgtaacgaagtttacaagttcttaga 34662045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 23451920 - 23451788
Alignment:
Q  1 tttcatcaatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgca 100  Q
    ||||||||| |||||||| |||||||| ||||||||||  |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||    
T  23451920 tttcatcaacgatatctttgagaagctcgctcaagaatactccagacttgctcgctacaacaagaagccaacaatcacttcaagggaaattcagaccgca 23451821  T
Q  101 gtcagacttgttcttcctggtgaattggccaag 133  Q
    ||||| |||||||| || |||||||||||||||    
T  23451820 gtcaggcttgttctgcccggtgaattggccaag 23451788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 436 - 522
Target Start/End: Complemental strand, 23408326 - 23408240
Alignment:
Q  436 tgtggattgtgattgtttataattaatcaattttattgacactgtaatttgatcttggcttagatgcaaaattaaggatgttttttg 522  Q
    ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  23408326 tgtgggttgtgattgtttataattaatcaattttactgacactgtaatttgatcttggctgagatgcaaaattaaggatgttttttg 23408240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 83; Significance: 4e-39; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 60 - 174
Target Start/End: Original strand, 33216594 - 33216708
Alignment:
Q  60 acaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggc 159  Q
    |||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||| ||||||||||||||| |||||||||||||| || ||||||||    
T  33216594 acaagaagccaacaatcacttcaaggaaaattcaaactgctgtcagacttgttcttcttggtgaattggccaaacatgctgtttctgagggtaccaaggc 33216693  T
Q  160 tgtgactaagtttac 174  Q
    |||||| ||||||||    
T  33216694 tgtgaccaagtttac 33216708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 2 - 162
Target Start/End: Original strand, 41670491 - 41670651
Alignment:
Q  2 ttcatcaatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcag 101  Q
    ||||||||||||||||| |||||||| ||||| ||||| |||||||||||  | |||||||||||||| |||||||||||  |||| || |||||||| |    
T  41670491 ttcatcaatgatatctttgagaagctcgctcaggaatcttccagacttgcgaggtacaacaagaagcctacaatcacttctcgggagatacagactgctg 41670590  T
Q  102 tcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgt 162  Q
    |  | |||||||| || |||||| | || ||||||||||| ||||| || |||||||||||    
T  41670591 ttcgtcttgttctccccggtgaacttgctaagcatgctgtctctgagggaaccaaggctgt 41670651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 40795859 - 40796040
Alignment:
Q  1 tttcatcaatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgca 100  Q
    |||||||||||| ||||| |||||||| ||||| |||||||||||||| ||||| ||||||||||| || || ||||| ||  | || |||||||||||     
T  40795859 tttcatcaatgacatctttgagaagctcgctcaggaatcatccagactcgctcgctacaacaagaaacctaccatcacctctcgtgagattcagactgct 40795958  T
Q  101 gtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctctt 182  Q
    ||  | || |||||||| || ||| | |||||||| ||||| || || || ||||| || || ||||| |||||||||||||    
T  40795959 gttcgtctcgttcttcccggcgaacttgccaagcacgctgtctccgagggaaccaaagcagtcactaaatttacaagctctt 40796040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 29391556 - 29391717
Alignment:
Q  1 tttcatcaatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgca 100  Q
    |||||||||||||||||| ||||| || ||||| ||| | || ||| | ||||||||||||||||| || || || || || ||||| ||||| || ||     
T  29391556 tttcatcaatgatatctttgagaaactcgctcaggaagcttctagattggctcgttacaacaagaaaccgacgattacgtcgagggagattcaaacggct 29391655  T
Q  101 gtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgt 162  Q
    ||  |  | |||||||| ||||||||||| || ||||||||||| ||||| |||||||||||    
T  29391656 gtgcgtttggttcttcccggtgaattggcgaaacatgctgtttccgaaggaaccaaggctgt 29391717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 107 - 185
Target Start/End: Original strand, 45576399 - 45576477
Alignment:
Q  107 cttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttaga 185  Q
    |||||||| || | ||||||||| ||||||| ||||||||| || ||||| |||||||| || || |||||||||||||    
T  45576399 cttgttctgcccgatgaattggctaagcatgttgtttctgagggtaccaaagctgtgaccaaattcacaagctcttaga 45576477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 4 - 40
Target Start/End: Original strand, 33216558 - 33216594
Alignment:
Q  4 catcaatgatatcttcgagaagcttgctcaagaatca 40  Q
    ||||||||||||||||| |||||||||||||||||||    
T  33216558 catcaatgatatcttcgtgaagcttgctcaagaatca 33216594  T

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Target: chr7 (Bit Score: 76; Significance: 7e-35; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 60 - 183
Target Start/End: Original strand, 47317431 - 47317554
Alignment:
Q  60 acaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggc 159  Q
    |||||||||||||||||||||||||||||||||| ||||  ||||||||| |||||||||||||||||||||| |||| ||||||||| || ||||| ||    
T  47317431 acaagaagccaacaatcacttcaagggaaattcaaactgttgtcagacttattcttcctggtgaattggccaaacatgttgtttctgagggtaccaaagc 47317530  T
Q  160 tgtgactaagtttacaagctctta 183  Q
    |||||| |||||||| || |||||    
T  47317531 tgtgaccaagtttactagttctta 47317554  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 59 - 162
Target Start/End: Complemental strand, 40180400 - 40180297
Alignment:
Q  59 aacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaagg 158  Q
    ||||||||||| || || ||||| ||||| ||||| ||||| || ||| | ||||||||||| |||||||| || ||||||||||||||||| || ||||    
T  40180400 aacaagaagccgacgattacttctagggagattcaaactgctgttagattggttcttcctggagaattggctaaacatgctgtttctgaagggactaagg 40180301  T
Q  159 ctgt 162  Q
    ||||    
T  40180300 ctgt 40180297  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 4 - 40
Target Start/End: Original strand, 47317395 - 47317431
Alignment:
Q  4 catcaatgatatcttcgagaagcttgctcaagaatca 40  Q
    ||||||||||||||||| |||||||||||||||||||    
T  47317395 catcaatgatatcttcgtgaagcttgctcaagaatca 47317431  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 95 - 147
Target Start/End: Original strand, 14715433 - 14715485
Alignment:
Q  95 actgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctga 147  Q
    |||||||| ||||||||||||||||| |||||||||||||||| ||| |||||    
T  14715433 actgcagtgagacttgttcttcctggagaattggccaagcatgttgtgtctga 14715485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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