View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2585_high_15 (Length: 456)
Name: NF2585_high_15
Description: NF2585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2585_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 18 - 443
Target Start/End: Original strand, 55334889 - 55335321
Alignment:
| Q |
18 |
aaaacataaggataaaacataagaaatgacctcttaatcgagtgggatatgccatcaacaaacattgtattatcatagttaacccctaaagacgagtgaa |
117 |
Q |
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| T |
55334889 |
aaaacataaggataaaacataagaaatgacctcttaatcgagtgggatatgccatcaacaaacattgtattatcatagttaacccctaaagacgagtgaa |
55334988 |
T |
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| Q |
118 |
ccaaacttattatttaacccacacaaaatctttaaaaacatgatcaatatcttcttcagctagccgatttctttttacatatataataatattacatact |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55334989 |
ccaaacttattatttaacccacacaaaatctttaaaaacatgatcaatatcttcttcagctagccgatttctttttacatatataataatattacatact |
55335088 |
T |
|
| Q |
218 |
atttaagttattactgtttctcacgtgag----atatatatattttttgaattgaaattattgacattgtatttactat-aacaatatactaccctctcn |
312 |
Q |
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||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
55335089 |
atttaagttattactgtttctcacgtgagatatatatatatatattttgaattgaaattattgacattgtatttactatcaacaatatactaccctctca |
55335188 |
T |
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| Q |
313 |
nnnnnntctat--tatactataagattgattaagagataagatatttgtataattgttttgagataacttttagtcaactgagctataaatttattgtgt |
410 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |
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| T |
55335189 |
aaaaaatctattatatactataagattgattaagagataagatatttgtataattgttttgagacaacttttaatcaactgagctataaatttattgtgt |
55335288 |
T |
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| Q |
411 |
tcttaacctctcttacttctccttttcctttct |
443 |
Q |
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| T |
55335289 |
ttttaacctctcttacttctccttttcctttct |
55335321 |
T |
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