View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2585_high_2 (Length: 655)
Name: NF2585_high_2
Description: NF2585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2585_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 310; Significance: 1e-174; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 261 - 640
Target Start/End: Complemental strand, 41074643 - 41074260
Alignment:
| Q |
261 |
tggaattcactcgcccaagctagctagctagcaatagcatggtttt-attgaattagaaatactagttatgataagttctatgcatatgaatgcacaaat |
359 |
Q |
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| T |
41074643 |
tggaattcactcgcccaagctagctagctagcaatagtatggtttttattgaattagaaatactagttatgataagttctatgcatatgaatgcacaaat |
41074544 |
T |
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| Q |
360 |
cgatcaaacaaaatcaaatgacttaaaagcttgcaatattgtctgagatagttgtttttgttgtgtccaagtttgacttgaaagaccaagagtggatgta |
459 |
Q |
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| T |
41074543 |
cgatcaaaccaaatcaaatgacttaaaagcttgcaatattgtctgagatagttgtttttgttgtggccaagtttgacttgaaagaccatgaatggatgta |
41074444 |
T |
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| Q |
460 |
ttgtcgttgacggacttctgttgagttggttctgac---tgatgaggtaccagaaaaaccaatcctcactgtgtctggaagcactgctttcaaatcaatg |
556 |
Q |
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| T |
41074443 |
ttgtagttgacggacttgtgttaagttggtaccgactgatgatgaggtaccagaaaaaccaatcctcactgtgtccggaagcactgctttcaaatcaatg |
41074344 |
T |
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| Q |
557 |
acttgagcaatagttgaaaaggtaccatctgggtaagatacaatcacattcaatgtcttagagagattttcataggagatattt |
640 |
Q |
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| T |
41074343 |
acttgagcaatagttgaaaaggtaccatctgggtaagatacaatcacattcaatgtcttagagagactgtcataggagatattt |
41074260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 507 - 640
Target Start/End: Complemental strand, 41089493 - 41089360
Alignment:
| Q |
507 |
cagaaaaaccaatcctcactgtgtctggaagcactgctttcaaatcaatgacttgagcaatagttgaaaaggtaccatctgggtaagatacaatcacatt |
606 |
Q |
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| T |
41089493 |
cagaaaaaccaatccttaccgtgtgtggaagcacttctttcaaatcaatgacttgagcaatagttgaaaaggtaccatctgggtaagatacaacaacatt |
41089394 |
T |
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| Q |
607 |
caatgtcttagagagattttcataggagatattt |
640 |
Q |
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| T |
41089393 |
caatgtcttagagagattgtcataggagatattt |
41089360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 91 - 218
Target Start/End: Complemental strand, 41074819 - 41074692
Alignment:
| Q |
91 |
acctatcagatgacatagaactgaagcaggctttaatgaatacaaaaaactgctaaactagatgtgagttacaatcttaactcaattttcaaatatcaaa |
190 |
Q |
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| T |
41074819 |
acctatcagatgacatagaactaaagaagtctttaatgactacagaaaaatgctaaactagatgtgagttagaatcttaactcaattttcaaatatcaaa |
41074720 |
T |
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| Q |
191 |
tacggttcaatcatggtctttatttaag |
218 |
Q |
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| T |
41074719 |
tacggttcaatcatggtctttatttaag |
41074692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 362 - 447
Target Start/End: Complemental strand, 41089623 - 41089538
Alignment:
| Q |
362 |
atcaaacaaaatcaaatgacttaaaagcttgcaatattgtctgagatagttgtttttgttgtgtccaagtttgacttgaaagacca |
447 |
Q |
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||||||| |||||| |||||||||||||| ||||||||||||||| | || ||| ||||||||||||||||||| ||||||||||| |
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| T |
41089623 |
atcaaaccaaatcagatgacttaaaagctagcaatattgtctgaggtggtcgttgttgttgtgtccaagtttgatttgaaagacca |
41089538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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