View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2585_high_22 (Length: 414)
Name: NF2585_high_22
Description: NF2585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2585_high_22 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 16 - 394
Target Start/End: Original strand, 54032373 - 54032751
Alignment:
| Q |
16 |
aatatgttgtgtcagtggagccttaaccatggcatttctcaaaggaaataagctgttacatatggagtactttcttcctgattccaaacatctcactgca |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
54032373 |
aatatgttgtgtcagtggagccttaaccatggcatttctcaaaggaaataagctgttacatatggagttctttcttcctgattccaaacatctcactgca |
54032472 |
T |
|
| Q |
116 |
agtggagatgatacttggattctgggttgtctattgctcttagcaagtagtgttttttggtcatgttggatgatcatgcaggtaaaaaattaataaaacc |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54032473 |
agtggagatgatacttggattctgggttgtctattgctcttagcaagtagtgttttttggtcatgttggatgatcatgcaggtaaaaaattaataaaacc |
54032572 |
T |
|
| Q |
216 |
agaattaataatcttttaggtgacaagattattattcatcaatggacatttgattaaaatttcaacacaggtgccgatttcttcatcttgcccggatcat |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54032573 |
agaattaataatcttttaggtgacaagattattattcatcaatggacatttgattaaaatttcaacacaggtgccgatttcttcatcttgcccggatcat |
54032672 |
T |
|
| Q |
316 |
atattgtcgactttttggatgtgtctcttcgccacaatacagtcagctatatttgcactgatcaaagaggggaatcttc |
394 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54032673 |
atattgtcgactttttggatgtgtctcttcgccacaatacagtcagctatatttgcactgatcaaagaggggaatcttc |
54032751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University