View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2585_high_24 (Length: 406)

Name: NF2585_high_24
Description: NF2585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2585_high_24
NF2585_high_24
[»] chr8 (1 HSPs)
chr8 (16-405)||(19963630-19964011)
[»] chr4 (4 HSPs)
chr4 (20-291)||(1661275-1661539)
chr4 (20-316)||(19910065-19910356)
chr4 (329-405)||(19910343-19910419)
chr4 (238-311)||(55877785-55877858)
[»] chr1 (2 HSPs)
chr1 (16-126)||(7881453-7881563)
chr1 (239-311)||(26496510-26496582)
[»] chr3 (3 HSPs)
chr3 (185-315)||(25490145-25490274)
chr3 (67-141)||(25490311-25490385)
chr3 (239-311)||(46594474-46594546)
[»] scaffold0405 (2 HSPs)
scaffold0405 (78-142)||(13182-13246)
scaffold0405 (239-311)||(13354-13426)
[»] chr6 (1 HSPs)
chr6 (239-311)||(4436292-4436364)
[»] chr5 (1 HSPs)
chr5 (239-311)||(37718796-37718868)


Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 16 - 405
Target Start/End: Complemental strand, 19964011 - 19963630
Alignment:
Q  16 atgaaaaatttataaacttacccggctagtccacaaataaaaggacaaaagaaaacctttaaataaggcctttattttgccaaggaaccctgcaatggta 115  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |||||||||||    
T  19964011 atgaaaaatttataaacttacccggcgagtccacaaataaaaggacaaaagaaaatcttcaaataaggcctttattttgccaaggaactctgcaatggta 19963912  T
Q  116 catcgtcattgttaaattcaaaaattgatggagnnnnnnnnntaagttttaaatttcaggcataatgattaatgagagctattatctattccatatcttg 215  Q
    || ||||||||||||||||||||||||  ||||         ||||||||||||||||||||||||||       |||||||||||||||||||||||||    
T  19963911 caccgtcattgttaaattcaaaaattggaggagaaaaaacaataagttttaaatttcaggcataatga-------gagctattatctattccatatcttg 19963819  T
Q  216 aattaagaaatgcaaagagaagacctcaactaagttctaatgatccttttatcaaacagttaacatgcaaagtagccttcatcaaagtgaatgacttgta 315  Q
    | ||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||||||||| |||||| ||||||||||||||||    
T  19963818 atttaagaaatgcaaagagaagacctcgactaagttctaatgatccttttgtcaaacagttaaaatgcaaagtagcattcatcgaagtgaatgacttgta 19963719  T
Q  316 gtaatnnnnnnnntgaatgacttgtagatgatactaaattgggtactgccaaagcattgcatttccatttctccagttttgaaatctctc 405  Q
    ||| |        |||||||| | || |||||||||||||||| |||||||||||||  |||| | |||||||| |||||||||| ||||    
T  19963718 gtactaacaaaagtgaatgac-tataaatgatactaaattgggcactgccaaagcatcacattcctatttctcctgttttgaaatatctc 19963630  T

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Target: chr4 (Bit Score: 127; Significance: 2e-65; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 20 - 291
Target Start/End: Original strand, 1661275 - 1661539
Alignment:
Q  20 aaaatttataaacttacccggctagtccacaaataaaaggacaaaagaaaacctttaaataaggcctttattttgccaaggaaccctgcaatggtacatc 119  Q
    |||||||| |||||||| || | |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||||| |    
T  1661275 aaaatttaaaaacttactcgaccagtccacaaataaaagcacaaaagaaaaccttcaaataaggcctttattttgccaaggaagcctgtaatggtacacc 1661374  T
Q  120 gtcattgttaaattcaaaaattgatggagnnnnnnnnntaagttttaaatttcaggcataatgattaatgagagctattatctattccatatcttgaatt 219  Q
     | |||||||||||||||||| |  ||||         ||||||||||||| ||||||       ||||| ||||||||||||||||||| |||||| ||    
T  1661375 ataattgttaaattcaaaaatgggaggagaaaaaacaataagttttaaattacaggca-------taatgggagctattatctattccatgtcttgattt 1661467  T
Q  220 aagaaatgcaaagagaagacctcaactaagttctaatgatccttttatcaaacagttaacatgcaaagtagc 291  Q
    ||||||||||  |||||||||||||||||||| |||||||||||||||||||||||||  ||||||||||||    
T  1661468 aagaaatgcactgagaagacctcaactaagttttaatgatccttttatcaaacagttagaatgcaaagtagc 1661539  T

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Target: chr4; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 20 - 316
Target Start/End: Original strand, 19910065 - 19910356
Alignment:
Q  20 aaaatttataaacttacccggctagtccacaaataaaaggacaaaagaaaacctttaaataaggcctttattttgccaaggaaccctgcaatggtacatc 119  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||| ||||||| ||||    
T  19910065 aaaatttataaacttacccggccagtccacaaataaaaggacaaaa-aaaacctttaaataaggcctttattttgccaagaaatccttcaatggttcatc 19910163  T
Q  120 gtcattgttaaattcaaaaattgatggagnnnnnnnnntaagttttaaatttcaggcataatgattaatgagagctattatctattccatatcttgaatt 219  Q
     ||||| | ||||||||||||||  | ||         |||||||||||| ||||| |       |||||||| |||||||||||||||| |||||| ||    
T  19910164 ttcattctcaaattcaaaaattggagaagaaaaaacaataagttttaaatctcaggta-------taatgagacctattatctattccatgtcttgattt 19910256  T
Q  220 aagaaatgcaaagagaagacctcaactaagttctaatgatccttttatcaaacagtta-acatgc--aaagtagccttcatcaaagtgaatgacttgtag 316  Q
    |||||||||| |||||||||||||||||||||||  |||||||||||||| ||| ||| | ||||  ||| |||| ||||||||||||||||||||||||    
T  19910257 aagaaatgcatagagaagacctcaactaagttctcgtgatccttttatcatacaattataaatgcaaaaaatagcattcatcaaagtgaatgacttgtag 19910356  T

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Target: chr4; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 329 - 405
Target Start/End: Original strand, 19910343 - 19910419
Alignment:
Q  329 tgaatgacttgtagatgatactaaattgggtactgccaaagcattgcatttccatttctccagttttgaaatctctc 405  Q
    |||||||||||||||||||||||||||||  ||||||||| |||||||||||||||||||| |||||||||||||||    
T  19910343 tgaatgacttgtagatgatactaaattggacactgccaaaacattgcatttccatttctcccgttttgaaatctctc 19910419  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 311
Target Start/End: Complemental strand, 55877858 - 55877785
Alignment:
Q  238 acctcaactaagttctaatgatccttttatcaaacagttaacatgcaaagtagccttcatcaaagtgaatgact 311  Q
    ||||||||||| ||| |  ||||||||||||| ||| |||  |||||||||||| || ||||||| ||||||||    
T  55877858 acctcaactaaattcaagcgatccttttatcatacacttagaatgcaaagtagctttgatcaaagagaatgact 55877785  T

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Target: chr1 (Bit Score: 79; Significance: 8e-37; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 16 - 126
Target Start/End: Original strand, 7881453 - 7881563
Alignment:
Q  16 atgaaaaatttataaacttacccggctagtccacaaataaaaggacaaaagaaaacctttaaataaggcctttattttgccaaggaaccctgcaatggta 115  Q
    ||||||||||||||||  |||| ||| | ||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  7881453 atgaaaaatttataaatgtacctggccaatccacgaataagaggacaaaagaaaaccttcaaataaggcctttattttgccaaggaaccctgcaatggta 7881552  T
Q  116 catcgtcattg 126  Q
    |||||||||||    
T  7881553 catcgtcattg 7881563  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 239 - 311
Target Start/End: Complemental strand, 26496582 - 26496510
Alignment:
Q  239 cctcaactaagttctaatgatccttttatcaaacagttaacatgcaaagtagccttcatcaaagtgaatgact 311  Q
    |||||| ||||||||  ||||| ||||||  |||| |||| |||||||||||  ||||||||| |||||||||    
T  26496582 cctcaagtaagttcttgtgatctttttatagaacaattaaaatgcaaagtagatttcatcaaactgaatgact 26496510  T

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Target: chr3 (Bit Score: 71; Significance: 5e-32; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 185 - 315
Target Start/End: Complemental strand, 25490274 - 25490145
Alignment:
Q  185 taatgagagctattatctattccatatcttgaattaagaaatgcaaagagaagacctcaactaagttctaatgatccttttatcaaacagttaacatgca 284  Q
    |||||||||| |||| ||||| ||| |||||| |||| || |||| |||||||||||||||| ||||||| ||||||||||||||||| ||||  |||||    
T  25490274 taatgagagccattacctatttcatgtcttgatttaa-aattgcatagagaagacctcaacttagttctagtgatccttttatcaaacggttataatgca 25490176  T
Q  285 aagtagccttcatcaaagtgaatgacttgta 315  Q
    ||||||| |||||||||||||||||||||||    
T  25490175 aagtagctttcatcaaagtgaatgacttgta 25490145  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 141
Target Start/End: Complemental strand, 25490385 - 25490311
Alignment:
Q  67 aaaacctttaaataaggcctttattttgccaaggaaccctgcaatggtacatcgtcattgttaaattcaaaaatt 141  Q
    |||| ||| ||||||| |||||||||| |||||||||||   ||||||||||| ||||||| ||||| |||||||    
T  25490385 aaaaacttcaaataagacctttatttttccaaggaacccgctaatggtacatcctcattgtcaaatttaaaaatt 25490311  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 239 - 311
Target Start/End: Original strand, 46594474 - 46594546
Alignment:
Q  239 cctcaactaagttctaatgatccttttatcaaacagttaacatgcaaagtagccttcatcaaagtgaatgact 311  Q
    |||||| ||||||||  ||||| ||||||| |||| |||  |||||||||||  ||||||||| |||||||||    
T  46594474 cctcaagtaagttcttgtgatctttttatcgaacaattataatgcaaagtagatttcatcaaactgaatgact 46594546  T

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Target: scaffold0405 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: scaffold0405
Description:

Target: scaffold0405; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 142
Target Start/End: Original strand, 13182 - 13246
Alignment:
Q  78 ataaggcctttattttgccaaggaaccctgcaatggtacatcgtcattgttaaattcaaaaattg 142  Q
    ||||||||||  ||||||||||||||||||||| || || || ||||||| | ||||| ||||||    
T  13182 ataaggccttagttttgccaaggaaccctgcaaaggaacttcctcattgtcagattcagaaattg 13246  T

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Target: scaffold0405; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 239 - 311
Target Start/End: Original strand, 13354 - 13426
Alignment:
Q  239 cctcaactaagttctaatgatccttttatcaaacagttaacatgcaaagtagccttcatcaaagtgaatgact 311  Q
    ||||||| ||||||||  |||| ||||||||||||||||    ||||||||||  ||||||||||||| ||||    
T  13354 cctcaaccaagttctagagatcattttatcaaacagttagacggcaaagtagcactcatcaaagtgaacgact 13426  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 239 - 311
Target Start/End: Complemental strand, 4436364 - 4436292
Alignment:
Q  239 cctcaactaagttctaatgatccttttatcaaacagttaacatgcaaagtagccttcatcaaagtgaatgact 311  Q
    |||||| ||||||||  ||||| ||||||| |||| |||  |||||||||||  ||||||||| |||||||||    
T  4436364 cctcaagtaagttcttgtgatctttttatcgaacaattataatgcaaagtagatttcatcaaactgaatgact 4436292  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 239 - 311
Target Start/End: Original strand, 37718796 - 37718868
Alignment:
Q  239 cctcaactaagttctaatgatccttttatcaaacagttaacatgcaaagtagccttcatcaaagtgaatgact 311  Q
    |||||| ||||||||  ||||| ||||||| |||| |||  |||||||||||  ||||||||| |||||||||    
T  37718796 cctcaagtaagttcttgtgatctttttatcgaacaattataatgcaaagtagatttcatcaaactgaatgact 37718868  T

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