View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2585_high_27 (Length: 391)

Name: NF2585_high_27
Description: NF2585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2585_high_27
NF2585_high_27
[»] scaffold0022 (1 HSPs)
scaffold0022 (1-374)||(90868-91241)
[»] chr4 (7 HSPs)
chr4 (33-96)||(15724482-15724545)
chr4 (4-73)||(40006031-40006100)
chr4 (4-72)||(34306767-34306835)
chr4 (245-295)||(35678446-35678496)
chr4 (4-73)||(40179598-40179667)
chr4 (4-72)||(8423681-8423749)
chr4 (254-366)||(43307696-43307808)
[»] chr3 (4 HSPs)
chr3 (4-73)||(55401103-55401172)
chr3 (4-73)||(40993297-40993366)
chr3 (33-75)||(15796243-15796285)
chr3 (6-56)||(25093532-25093582)
[»] chr1 (7 HSPs)
chr1 (1-73)||(46348345-46348417)
chr1 (2-48)||(39130754-39130800)
chr1 (4-73)||(40181899-40181968)
chr1 (4-75)||(51410053-51410124)
chr1 (4-57)||(18190086-18190139)
chr1 (4-73)||(22515849-22515918)
chr1 (4-56)||(18337357-18337409)
[»] scaffold0053 (1 HSPs)
scaffold0053 (1-72)||(8823-8894)
[»] chr7 (7 HSPs)
chr7 (4-71)||(15680837-15680904)
chr7 (33-73)||(13770753-13770793)
chr7 (5-73)||(20549820-20549888)
chr7 (1-57)||(21864833-21864889)
chr7 (33-75)||(9778562-9778604)
chr7 (4-73)||(21880180-21880249)
chr7 (33-77)||(8234203-8234247)
[»] chr6 (5 HSPs)
chr6 (4-75)||(33001249-33001320)
chr6 (4-73)||(12627539-12627608)
chr6 (4-57)||(7265571-7265624)
chr6 (4-72)||(7977793-7977861)
chr6 (33-73)||(16766765-16766805)
[»] scaffold0050 (1 HSPs)
scaffold0050 (4-73)||(70306-70375)
[»] chr2 (4 HSPs)
chr2 (4-73)||(20242689-20242758)
chr2 (24-66)||(32355466-32355508)
chr2 (33-73)||(19580247-19580287)
chr2 (33-73)||(38117121-38117161)
[»] chr8 (5 HSPs)
chr8 (329-373)||(7415307-7415351)
chr8 (4-76)||(33405343-33405415)
chr8 (4-71)||(14134727-14134794)
chr8 (317-371)||(38263104-38263158)
chr8 (4-73)||(31580089-31580158)
[»] scaffold0039 (1 HSPs)
scaffold0039 (24-73)||(84924-84973)
[»] chr5 (3 HSPs)
chr5 (4-73)||(21191018-21191087)
chr5 (4-73)||(43564909-43564978)
chr5 (11-71)||(42893395-42893455)


Alignment Details
Target: scaffold0022 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 374
Target Start/End: Original strand, 90868 - 91241
Alignment:
Q  1 catataatttagtgtaattatatatgtcgatatcggacacaacacgtgtccgacaccaaaacacgcctaatccaattattttatgtgcttcatagtctga 100  Q
    ||||||||| ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||| ||    
T  90868 catataattcagtgtaattatatatgtcgatgtcagacacaacacgtgtccgacaccaaaacacgcctaatccaatgagtgtatgtgcttcatagtccga 90967  T
Q  101 aacacagcaaacaacaacaatatttcttaagtatatcacttcttatatatgtggggatgcaacagccaaaagatgacattttctatgaatagttaaccca 200  Q
    |||||  |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  90968 aacacttcaaacaaccacaatatttctgaagtatatcacttcttatatatgtggggatgcaacagccaaaagatgaaattttctatgaatagttaaccca 91067  T
Q  201 gtagtttcagccatgtccaaactttgatccctctccactccactaggcaatgaccaatcaaattgatgaacaagattagctaaaaccaactcattaacaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  91068 gtagtttcagccatgtccaaactttgatccctctccactccactaggcaatgaccaatcaaattgatgaacaagattagctaaaaccaactcattaacaa 91167  T
Q  301 ccatagcaaaacttattccaggacaaccccttctaccagcaccaaaaggtatcaactgaaaatcatgtccttta 374  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  91168 ccatagcaaaacttattccaggacaaccccttctaccagcaccaaaaggtatcaactgaaaatcatgtccttta 91241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 33 - 96
Target Start/End: Complemental strand, 15724545 - 15724482
Alignment:
Q  33 tcggacacaacacgtgtccgacaccaaaacacgcctaatccaattattttatgtgcttcatagt 96  Q
    |||||||||||||||||| |||||||||||||||||||||| |  | |||||||||||||||||    
T  15724545 tcggacacaacacgtgtcagacaccaaaacacgcctaatccgaggagtttatgtgcttcatagt 15724482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 73
Target Start/End: Original strand, 40006031 - 40006100
Alignment:
Q  4 ataatttagtgtaattatatatgtcgatatcggacacaacacgtgtccgacaccaaaacacgcctaatcc 73  Q
    |||||||  ||||||||||||||||||||||| |||| |||| ||||||| ||| | |||||||||||||    
T  40006031 ataattttatgtaattatatatgtcgatatcgaacacgacacatgtccgataccgagacacgcctaatcc 40006100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 72
Target Start/End: Complemental strand, 34306835 - 34306767
Alignment:
Q  4 ataatttagtgtaattatatatgtcgatatcggacacaacacgtgtccgacaccaaaacacgcctaatc 72  Q
    ||||| ||||||||||| |  ||||| | |||||||| |||||||||||||||| | ||||||||||||    
T  34306835 ataatgtagtgtaattacaagtgtcggtgtcggacacgacacgtgtccgacaccgagacacgcctaatc 34306767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 295
Target Start/End: Complemental strand, 35678496 - 35678446
Alignment:
Q  245 aggcaatgaccaatcaaattgatgaacaagattagctaaaaccaactcatt 295  Q
    |||||||  ||||||||||||||||||||| || ||||||||||| |||||    
T  35678496 aggcaatttccaatcaaattgatgaacaaggttcgctaaaaccaattcatt 35678446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 73
Target Start/End: Complemental strand, 40179667 - 40179598
Alignment:
Q  4 ataatttagtgtaattatatatgtcgatatcggacacaacacgtgtccgacaccaaaacacgcctaatcc 73  Q
    |||||| |||||||||||||  |||| | |||||||| |||| ||| ||||||||  |||||||||||||    
T  40179667 ataattcagtgtaattatatgcgtcggtgtcggacacgacacatgttcgacaccatgacacgcctaatcc 40179598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 72
Target Start/End: Complemental strand, 8423749 - 8423681
Alignment:
Q  4 ataatttagtgtaattatatatgtcgatatcggacacaacacgtgtccgacaccaaaacacgcctaatc 72  Q
    |||||| |||||||||||| |||||| | |||||||| |||  |||||||||||   ||||||||||||    
T  8423749 ataattcagtgtaattataaatgtcggtgtcggacacgacagctgtccgacaccgggacacgcctaatc 8423681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 366
Target Start/End: Original strand, 43307696 - 43307808
Alignment:
Q  254 ccaatcaaattgatgaacaagattagctaaaaccaactcattaacaaccatagcaaaacttattccaggacaaccccttctaccagcaccaaaaggtatc 353  Q
    ||||| ||||||||| ||||| || ||||| || |  |||||  ||||||||||| ||  ||| ||||||||||||||||| || || ||||| || |||    
T  43307696 ccaattaaattgatgtacaaggttggctaacacaagttcattggcaaccatagcataaactatcccaggacaaccccttctccctgctccaaatggaatc 43307795  T
Q  354 aactgaaaatcat 366  Q
    || || |||||||    
T  43307796 aaatggaaatcat 43307808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 73
Target Start/End: Original strand, 55401103 - 55401172
Alignment:
Q  4 ataatttagtgtaattatatatgtcgatatcggacacaacacgtgtccgacaccaaaacacgcctaatcc 73  Q
    ||||||||||||||||| |  ||||| | |||||||| |||||||||||||||| | |||||||||||||    
T  55401103 ataatttagtgtaattacaagtgtcggtgtcggacacgacacgtgtccgacaccgagacacgcctaatcc 55401172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 4 - 73
Target Start/End: Complemental strand, 40993366 - 40993297
Alignment:
Q  4 ataatttagtgtaattatatatgtcgatatcggacacaacacgtgtccgacaccaaaacacgcctaatcc 73  Q
    |||||| ||||||||||||| ||||| | |||||||| |||| |||||||||||   |||||||||||||    
T  40993366 ataattcagtgtaattatatgtgtcggtgtcggacacgacacatgtccgacaccgggacacgcctaatcc 40993297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 75
Target Start/End: Complemental strand, 15796285 - 15796243
Alignment:
Q  33 tcggacacaacacgtgtccgacaccaaaacacgcctaatccaa 75  Q
    ||||||||||||||||||| |||||  ||||||||||||||||    
T  15796285 tcggacacaacacgtgtccaacaccggaacacgcctaatccaa 15796243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 56
Target Start/End: Original strand, 25093532 - 25093582
Alignment:
Q  6 aatttagtgtaattatatatgtcgatatcggacacaacacgtgtccgacac 56  Q
    |||| ||||||||||||| ||||| | ||||||||||||| ||||||||||    
T  25093532 aattcagtgtaattatatgtgtcggtgtcggacacaacacatgtccgacac 25093582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 46348417 - 46348345
Alignment:
Q  1 catataatttagtgtaattatatatgtcgatatcggacacaacacgtgtccgacaccaaaacacgcctaatcc 73  Q
    |||||||||||||||||||| |  ||||| | |||||||| |||||||||||||||| | |||||||| ||||    
T  46348417 catataatttagtgtaattacaagtgtcggtgtcggacacgacacgtgtccgacaccgagacacgcctgatcc 46348345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 48
Target Start/End: Complemental strand, 39130800 - 39130754
Alignment:
Q  2 atataatttagtgtaattatatatgtcgatatcggacacaacacgtg 48  Q
    |||||||||||||||||||||| ||||| | ||||||||||||||||    
T  39130800 atataatttagtgtaattatatgtgtcggtgtcggacacaacacgtg 39130754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 4 - 73
Target Start/End: Original strand, 40181899 - 40181968
Alignment:
Q  4 ataatttagtgtaattatatatgtcgatatcggacacaacacgtgtccgacaccaaaacacgcctaatcc 73  Q
    |||||| ||||||||||||| | ||| | ||||||||||||||||||| |||||   |||||||||||||    
T  40181899 ataattcagtgtaattatatgtatcggtgtcggacacaacacgtgtcctacaccgggacacgcctaatcc 40181968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 4 - 75
Target Start/End: Original strand, 51410053 - 51410124
Alignment:
Q  4 ataatttagtgtaattatatatgtcgatatcggacacaacacgtgtccgacaccaaaacacgcctaatccaa 75  Q
    |||||| |||||||||| |  ||||| | |||||||| |||||| ||||||||| | |||||||||||||||    
T  51410053 ataattcagtgtaattacaagtgtcggtgtcggacacgacacgtatccgacaccgagacacgcctaatccaa 51410124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 57
Target Start/End: Complemental strand, 18190139 - 18190086
Alignment:
Q  4 ataatttagtgtaattatatatgtcgatatcggacacaacacgtgtccgacacc 57  Q
    |||||| |||||||||| |  ||||||| || ||||||||||||||||||||||    
T  18190139 ataattcagtgtaattacaagtgtcgatgtcagacacaacacgtgtccgacacc 18190086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 73
Target Start/End: Complemental strand, 22515918 - 22515849
Alignment:
Q  4 ataatttagtgtaattatatatgtcgatatcggacacaacacgtgtccgacaccaaaacacgcctaatcc 73  Q
    ||||||||||||||||| |  ||||| | |||||||| |||| | ||||||||| | |||||||||||||    
T  22515918 ataatttagtgtaattacaagtgtcggtgtcggacacgacacatatccgacaccgagacacgcctaatcc 22515849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 56
Target Start/End: Original strand, 18337357 - 18337409
Alignment:
Q  4 ataatttagtgtaattatatatgtcgatatcggacacaacacgtgtccgacac 56  Q
    |||||| |||||||||| |  ||||| | ||||||||||||||||||||||||    
T  18337357 ataattcagtgtaattacaagtgtcggtgtcggacacaacacgtgtccgacac 18337409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 8823 - 8894
Alignment:
Q  1 catataatttagtgtaattatatatgtcgatatcggacacaacacgtgtccgacaccaaaacacgcctaatc 72  Q
    ||||| |||||||||||||| |  ||||| | |||||||| |||||||||||||||| | ||||||||||||    
T  8823 catattatttagtgtaattacaagtgtcggtgtcggacacgacacgtgtccgacaccgagacacgcctaatc 8894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 4 - 71
Target Start/End: Original strand, 15680837 - 15680904
Alignment:
Q  4 ataatttagtgtaattatatatgtcgatatcggacacaacacgtgtccgacaccaaaacacgcctaat 71  Q
    |||||||||||||||||||  ||||| | |||||||| |||||||||||||||| | ||||| |||||    
T  15680837 ataatttagtgtaattataagtgtcggtgtcggacacgacacgtgtccgacaccgagacacgtctaat 15680904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 73
Target Start/End: Original strand, 13770753 - 13770793
Alignment:
Q  33 tcggacacaacacgtgtccgacaccaaaacacgcctaatcc 73  Q
    |||||||||||||||||||||||||  ||||||||||||||    
T  13770753 tcggacacaacacgtgtccgacaccggaacacgcctaatcc 13770793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 73
Target Start/End: Original strand, 20549820 - 20549888
Alignment:
Q  5 taatttagtgtaattatatatgtcgatatcggacacaacacgtgtccgacaccaaaacacgcctaatcc 73  Q
    ||||| ||||||||||||| ||||| | ||||||||||||| |||||||||   | |||||||||||||    
T  20549820 taattcagtgtaattatatgtgtcggtgtcggacacaacacatgtccgacaatgagacacgcctaatcc 20549888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 21864833 - 21864889
Alignment:
Q  1 catataatttagtgtaattatatatgtcgatatcggacacaacacgtgtccgacacc 57  Q
    |||||||||||||||||||| |  ||||| | |||||||| ||||||||||||||||    
T  21864833 catataatttagtgtaattacaagtgtcgctgtcggacacgacacgtgtccgacacc 21864889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 75
Target Start/End: Original strand, 9778562 - 9778604
Alignment:
Q  33 tcggacacaacacgtgtccgacaccaaaacacgcctaatccaa 75  Q
    |||||||||||||||||||||||||   |||||||||||||||    
T  9778562 tcggacacaacacgtgtccgacaccgggacacgcctaatccaa 9778604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 73
Target Start/End: Original strand, 21880180 - 21880249
Alignment:
Q  4 ataatttagtgtaattatatatgtcgatatcggacacaacacgtgtccgacaccaaaacacgcctaatcc 73  Q
    |||||| |||||||||| |  ||||| | |||||||| |||| ||||||||||||  |||||||||||||    
T  21880180 ataattcagtgtaattacaagtgtcggtgtcggacacgacacatgtccgacaccaggacacgcctaatcc 21880249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 77
Target Start/End: Original strand, 8234203 - 8234247
Alignment:
Q  33 tcggacacaacacgtgtccgacaccaaaacacgcctaatccaatt 77  Q
    |||||||| |||| ||||||||||| | |||||||||||||||||    
T  8234203 tcggacacgacacatgtccgacaccgagacacgcctaatccaatt 8234247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 4 - 75
Target Start/End: Complemental strand, 33001320 - 33001249
Alignment:
Q  4 ataatttagtgtaattatatatgtcgatatcggacacaacacgtgtccgacaccaaaacacgcctaatccaa 75  Q
    |||||| | ||||||||||| ||||| | |||||||| ||||||||| |||||| ||| |||||||||||||    
T  33001320 ataattaaatgtaattatatgtgtcggtgtcggacacgacacgtgtctgacaccgaaatacgcctaatccaa 33001249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 4 - 73
Target Start/End: Complemental strand, 12627608 - 12627539
Alignment:
Q  4 ataatttagtgtaattatatatgtcgatatcggacacaacacgtgtccgacaccaaaacacgcctaatcc 73  Q
    |||||| |||||||| |||| ||||||| |||||||| |||| ||||||||||| | |||| ||||||||    
T  12627608 ataattcagtgtaataatatgtgtcgatgtcggacaccacacatgtccgacaccgagacactcctaatcc 12627539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 57
Target Start/End: Complemental strand, 7265624 - 7265571
Alignment:
Q  4 ataatttagtgtaattatatatgtcgatatcggacacaacacgtgtccgacacc 57  Q
    |||||| ||||||||||||| ||||| | |||||||||| || |||||||||||    
T  7265624 ataattcagtgtaattatatgtgtcggtgtcggacacaatacatgtccgacacc 7265571  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 72
Target Start/End: Complemental strand, 7977861 - 7977793
Alignment:
Q  4 ataatttagtgtaattatatatgtcgatatcggacacaacacgtgtccgacaccaaaacacgcctaatc 72  Q
    |||||| |||||||||| |  ||||| | ||||||||||||  ||||||||| | ||||||||||||||    
T  7977861 ataattcagtgtaattacaagtgtcggtgtcggacacaacatatgtccgacaacgaaacacgcctaatc 7977793  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 73
Target Start/End: Original strand, 16766765 - 16766805
Alignment:
Q  33 tcggacacaacacgtgtccgacaccaaaacacgcctaatcc 73  Q
    |||||||||||||||||||||||||   |||||||||||||    
T  16766765 tcggacacaacacgtgtccgacaccgggacacgcctaatcc 16766805  T

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Target: scaffold0050 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 4 - 73
Target Start/End: Original strand, 70306 - 70375
Alignment:
Q  4 ataatttagtgtaattatatatgtcgatatcggacacaacacgtgtccgacaccaaaacacgcctaatcc 73  Q
    |||||| ||||||||||||  ||||| | |||||||| |||||||||||||||||  ||| |||||||||    
T  70306 ataattcagtgtaattataagtgtcggtgtcggacacgacacgtgtccgacaccaggacatgcctaatcc 70375  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 4 - 73
Target Start/End: Complemental strand, 20242758 - 20242689
Alignment:
Q  4 ataatttagtgtaattatatatgtcgatatcggacacaacacgtgtccgacaccaaaacacgcctaatcc 73  Q
    |||||| ||||||||||||| ||||| | |||||||||||||||||| ||||| |  |||||||| ||||    
T  20242758 ataattcagtgtaattatatgtgtcggtgtcggacacaacacgtgtctgacacgaggacacgccttatcc 20242689  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 66
Target Start/End: Original strand, 32355466 - 32355508
Alignment:
Q  24 atgtcgatatcggacacaacacgtgtccgacaccaaaacacgc 66  Q
    |||||| |||||||||| ||| |||||||||||||||||||||    
T  32355466 atgtcggtatcggacacgacatgtgtccgacaccaaaacacgc 32355508  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 73
Target Start/End: Complemental strand, 19580287 - 19580247
Alignment:
Q  33 tcggacacaacacgtgtccgacaccaaaacacgcctaatcc 73  Q
    ||||||||||||||||||| ||||||||||||  |||||||    
T  19580287 tcggacacaacacgtgtccaacaccaaaacacatctaatcc 19580247  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 73
Target Start/End: Complemental strand, 38117161 - 38117121
Alignment:
Q  33 tcggacacaacacgtgtccgacaccaaaacacgcctaatcc 73  Q
    |||||||||||||||||||||||||   |||||||||||||    
T  38117161 tcggacacaacacgtgtccgacaccgggacacgcctaatcc 38117121  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 329 - 373
Target Start/End: Original strand, 7415307 - 7415351
Alignment:
Q  329 ccttctaccagcaccaaaaggtatcaactgaaaatcatgtccttt 373  Q
    |||||||||||||||||| |||| ||||| |||||||||||||||    
T  7415307 ccttctaccagcaccaaatggtaacaactcaaaatcatgtccttt 7415351  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 76
Target Start/End: Complemental strand, 33405415 - 33405343
Alignment:
Q  4 ataatttagtgtaattatatatgtcgatatcggacacaacacgtgtccgacaccaaaacacgcctaatccaat 76  Q
    |||||||||||||||||||| ||||| | |||||||| |||| |||| ||||||   ||||| ||||||||||    
T  33405415 ataatttagtgtaattatatgtgtcggtgtcggacacgacacatgtctgacacctggacacggctaatccaat 33405343  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 4 - 71
Target Start/End: Original strand, 14134727 - 14134794
Alignment:
Q  4 ataatttagtgtaattatatatgtcgatatcggacacaacacgtgtccgacaccaaaacacgcctaat 71  Q
    |||||| ||||||||||||||||||| | ||  |||| ||||||||||| |||||  |||||||||||    
T  14134727 ataattcagtgtaattatatatgtcggtgtcaaacacgacacgtgtccgtcaccaggacacgcctaat 14134794  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 317 - 371
Target Start/End: Complemental strand, 38263158 - 38263104
Alignment:
Q  317 tccaggacaaccccttctaccagcaccaaaaggtatcaactgaaaatcatgtcct 371  Q
    |||||||||||||||||||||||  ||||| ||||| | |||||||||| |||||    
T  38263158 tccaggacaaccccttctaccagacccaaatggtatgagctgaaaatcacgtcct 38263104  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 73
Target Start/End: Complemental strand, 31580158 - 31580089
Alignment:
Q  4 ataatttagtgtaattatatatgtcgatatcggacacaacacgtgtccgacaccaaaacacgcctaatcc 73  Q
    |||||| ||||||||||||  ||||||| |||||| | |||| ||| ||||||| |||||| ||||||||    
T  31580158 ataattgagtgtaattataggtgtcgatgtcggacgcgacacatgttcgacaccgaaacacacctaatcc 31580089  T

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Target: scaffold0039 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 84973 - 84924
Alignment:
Q  24 atgtcgatatcggacacaacacgtgtccgacaccaaaacacgcctaatcc 73  Q
    |||||||| ||| ||||||||||||||||||| ||  |||||||||||||    
T  84973 atgtcgatgtcgaacacaacacgtgtccgacaacaggacacgcctaatcc 84924  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 73
Target Start/End: Complemental strand, 21191087 - 21191018
Alignment:
Q  4 ataatttagtgtaattatatatgtcgatatcggacacaacacgtgtccgacaccaaaacacgcctaatcc 73  Q
    |||||| |||||||||| |  ||||| | |||||||||||||||||||||| ||   |||||||||||||    
T  21191087 ataattcagtgtaattacaagtgtcggtgtcggacacaacacgtgtccgactccgggacacgcctaatcc 21191018  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 73
Target Start/End: Original strand, 43564909 - 43564978
Alignment:
Q  4 ataatttagtgtaattatatatgtcgatatcggacacaacacgtgtccgacaccaaaacacgcctaatcc 73  Q
    |||||||||||||||||||  ||||| | |||||||| ||| ||||||||| ||   |||||||||||||    
T  43564909 ataatttagtgtaattataagtgtcggtgtcggacacgacatgtgtccgacgccgggacacgcctaatcc 43564978  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 71
Target Start/End: Original strand, 42893395 - 42893455
Alignment:
Q  11 agtgtaattatatatgtcgatatcggacacaacacgtgtccgacaccaaaacacgcctaat 71  Q
    |||||||||| |  ||||| | || |||||||||||||||||||||||  |||||||||||    
T  42893395 agtgtaattacaagtgtcggtgtcagacacaacacgtgtccgacaccaggacacgcctaat 42893455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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