View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2585_high_29 (Length: 360)
Name: NF2585_high_29
Description: NF2585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2585_high_29 |
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| [»] scaffold0187 (5 HSPs) |
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Alignment Details
Target: scaffold0187 (Bit Score: 276; Significance: 1e-154; HSPs: 5)
Name: scaffold0187
Description:
Target: scaffold0187; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 18 - 344
Target Start/End: Complemental strand, 8903 - 8576
Alignment:
| Q |
18 |
ccctcagaaggaatagtcaatgattgaatgatattaatacactcattcaattatggtggctgatggatcatggaaaatacataaaatcagaaagattatt |
117 |
Q |
| |
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|||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8903 |
ccctcaaaaggaatagtcaatgattaaatgatattaatacactcattcaattatggtggctgatggatcatggaaaatacataaaatcagaaagattatt |
8804 |
T |
|
| Q |
118 |
ggtatatatagtcttttacaaagaacattattggatgagtgagaaataaaatagagtagccttagcttaaacattctgcattaaacccacctttatacct |
217 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
8803 |
ggtatatatagtcttttacaaagaacattattggatgagtgagaattaaaatagagtagccttagcttaaacattctgcattagacccacctttatacct |
8704 |
T |
|
| Q |
218 |
ttatatctgtggtgcttaagctctc-tttaactatcttccatcacctcattaatcaacatacatccattttcataacataacacgttacatgtatcctcc |
316 |
Q |
| |
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||| ||| |||||| | || ||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |
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| T |
8703 |
ttaaatcggtggtgatgaacctctcttttaactatcttccatcacctcattaatcatcatacatccattttcacaacataacacgttacatgtatcctcc |
8604 |
T |
|
| Q |
317 |
aaagtgaacaaagacaagtaaacatcat |
344 |
Q |
| |
|
|||||||||||||||||||||||||||| |
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| T |
8603 |
aaagtgaacaaagacaagtaaacatcat |
8576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 18 - 344
Target Start/End: Complemental strand, 19231 - 18904
Alignment:
| Q |
18 |
ccctcagaaggaatagtcaatgattgaatgatattaatacactcattcaattatggtggctgatggatcatggaaaatacataaaatcagaaagattatt |
117 |
Q |
| |
|
|||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19231 |
ccctcaaaaggaatagtcaatgattaaatgatattaatacactcattcaattatggtggctgatggatcatggaaaatacataaaatcagaaagattatt |
19132 |
T |
|
| Q |
118 |
ggtatatatagtcttttacaaagaacattattggatgagtgagaaataaaatagagtagccttagcttaaacattctgcattaaacccacctttatacct |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
19131 |
ggtatatatagtcttttacaaagaacattattggatgagtgagaattaaaatagagtagccttagcttaaacattctgcattagacccacctttatacct |
19032 |
T |
|
| Q |
218 |
ttatatctgtggtgcttaagctctc-tttaactatcttccatcacctcattaatcaacatacatccattttcataacataacacgttacatgtatcctcc |
316 |
Q |
| |
|
||| ||| |||||| | || ||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
19031 |
ttaaatcggtggtgatgaacctctcttttaactatcttccatcacctcattaatcatcatacatccattttcacaacataacacgttacatgtatcctcc |
18932 |
T |
|
| Q |
317 |
aaagtgaacaaagacaagtaaacatcat |
344 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
18931 |
aaagtgaacaaagacaagtaaacatcat |
18904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 89 - 344
Target Start/End: Complemental strand, 30070 - 29814
Alignment:
| Q |
89 |
ggaaaatacataaaatcagaaagattattggtatatatagtcttttacaaagaacattattggatgagtgagaaataaaatagagtagccttagcttaaa |
188 |
Q |
| |
|
|||| |||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
30070 |
ggaacatacgtaaaatcagaaagattaccggtatatatagtcttttacaaggaacattattggatgagtgagaaataaaatagtgtagccttagcttaaa |
29971 |
T |
|
| Q |
189 |
cattctgcattaaacccacctttatacctttatatctgtggtgcttaagctctc-tttaactatcttccatcacctcattaatcaacatacatccatttt |
287 |
Q |
| |
|
|||||||||||| |||||||||||||||||| ||| |||||| |||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
29970 |
cattctgcattagtcccacctttatacctttaaatcggtggtgattaagctctcttttaactatcttccatcacctcattaatcatcatacatccatttt |
29871 |
T |
|
| Q |
288 |
cataacataacacgttacatgtatcctccaaagtgaacaaagacaagtaaacatcat |
344 |
Q |
| |
|
|| ||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |
|
|
| T |
29870 |
cacaacataacacgttacatatatcctccaaagtgaacaaagacaggtaaacatcat |
29814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #4
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 22 - 343
Target Start/End: Complemental strand, 1700 - 1386
Alignment:
| Q |
22 |
cagaaggaatagtcaatgattgaatgatattaatacactcattcaattatggtggctgatggatcatggaaaatacataaaatcagaaagattattggta |
121 |
Q |
| |
|
||||||||||||||||||| |||||||| || |||||||| ||||||| ||||||||||| || |||| |||||||||||||||||| ||||| |
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| T |
1700 |
cagaaggaatagtcaatgactgaatgatgtt--------cattcaatcatggtggatgatggatcatcgataatatataaaatcagaaagattactggta |
1609 |
T |
|
| Q |
122 |
tatata-----gtcttttacaaagaacattattggatgagtgagaaataaaatagagtagccttagcttaaacattctgcattaaacccacctttatacc |
216 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
1608 |
tatataatatagtcttttacaaagaacattattggatgagtgagaaataaaatagagtagccttagcttaaacattatgcattaaacccacctt------ |
1515 |
T |
|
| Q |
217 |
tttatatctgtggtgcttaagctctc-tttaactatcttccatcacctcattaatcaacatacatccattttcataac---ataacacgttacatgtatc |
312 |
Q |
| |
|
||||||||||||| |||||||| | ||||||||||||||||||| |||||||||| ||||||| ||| |||| | | || ||||||| |||||| | |
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|
| T |
1514 |
--tatatctgtggtgtttaagctcacttttaactatcttccatcacttcattaatcatcatacattcatcttcacagcacaattacacgttccatgtacc |
1417 |
T |
|
| Q |
313 |
ctccaaagtgaacaaagacaagtaaacatca |
343 |
Q |
| |
|
||||||||| ||||| |||| |||||||||| |
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| T |
1416 |
ctccaaagtaaacaaggacaggtaaacatca |
1386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 24 - 75
Target Start/End: Complemental strand, 30865 - 30814
Alignment:
| Q |
24 |
gaaggaatagtcaatgattgaatgatattaatacactcattcaattatggtg |
75 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
30865 |
gaaggaatagtcaatggctgaatgatattaatacactcattcaattatggtg |
30814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 89 - 344
Target Start/End: Original strand, 37909007 - 37909263
Alignment:
| Q |
89 |
ggaaaatacataaaatcagaaagattattggtatatatagtcttttacaaagaacattattggatgagtgagaaataaaatagagtagccttagcttaaa |
188 |
Q |
| |
|
|||| |||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
37909007 |
ggaacatacgtaaaatcagaaagattaccggtatatatagtcttttacaaggaacattattggatgagtgagaaataaaatagtgtagccttagcttaaa |
37909106 |
T |
|
| Q |
189 |
cattctgcattaaacccacctttatacctttatatctgtggtgcttaagctctc-tttaactatcttccatcacctcattaatcaacatacatccatttt |
287 |
Q |
| |
|
|||||||||||| |||||||||||||||||| ||| |||||| |||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
37909107 |
cattctgcattagtcccacctttatacctttaaatcggtggtgattaagctctcttttaactatcttccatcacctcattaatcatcatacatccatttt |
37909206 |
T |
|
| Q |
288 |
cataacataacacgttacatgtatcctccaaagtgaacaaagacaagtaaacatcat |
344 |
Q |
| |
|
|| ||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |
|
|
| T |
37909207 |
cacaacataacacgttacatatatcctccaaagtgaacaaagacaggtaaacatcat |
37909263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 65 - 344
Target Start/End: Original strand, 37865800 - 37866080
Alignment:
| Q |
65 |
caattatggtggctgatggatcatggaaaatacataaaatcagaaagattattggtatatatagtcttttacaaagaacattattggatgagtgagaaat |
164 |
Q |
| |
|
||||||| ||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
37865800 |
caattatagtgaatgatggatcatcgatcatacataaaatcagaaagattattggtatatatagtcttttacaaagaacattattggatgagtgagaatt |
37865899 |
T |
|
| Q |
165 |
aaaatagagtagccttagcttaaacattctgcattaaacccacctttatacctttatatctgtggtgcttaagctctcttta--actatcttccatcacc |
262 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||| || | |||||||||||| |
|
|
| T |
37865900 |
aaaatagagtagccttagcttagacattctgcattaaacccatctttata-ctttatatctgtggtgtttaagctctctctatgccattcttccatcacc |
37865998 |
T |
|
| Q |
263 |
tcattaatcaacatacatccattttcataacataacacgttacatgtatcctccaaagtgaacaaagacaagtaaacatcat |
344 |
Q |
| |
|
|||||||||| ||||||| |||||||| |||||| |||||| ||||| ||||||| || ||||||||| | |||||||||| |
|
|
| T |
37865999 |
tcattaatcatcatacattcattttcacaacatagcacgttcaatgtaccctccaatgtaaacaaagaccaataaacatcat |
37866080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 60 - 318
Target Start/End: Original strand, 37879709 - 37879973
Alignment:
| Q |
60 |
tcattcaattatggtggctgatggatcatggaaa-----atacataaaatcagaaagattattggtatatatagtcttttacaaagaacattattggatg |
154 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||| ||||||||| ||| ||||||| |||||| |||||||||||||||||||| ||| ||| |
|
|
| T |
37879709 |
tcattcaattatggtggatgacggatcatggaagtgaacatacataaactcaaaaagattgcaagtatatgtagtcttttacaaagaacatacttgaatg |
37879808 |
T |
|
| Q |
155 |
agtgagaaataaaatagagtagccttagcttaaacattctgcattaaacccacctttatacctttatatctgtggtgcttaagctctc-tttaactatct |
253 |
Q |
| |
|
| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
37879809 |
aatgagaaataaaatagagtagcattagcttaaacattctgcattaaacccacctttatacctttatatctgtggtgcttaagctctcttttaactatct |
37879908 |
T |
|
| Q |
254 |
tccatcacctcattaatcaacatacatccattttcataacataacacgttacatgtatcctccaa |
318 |
Q |
| |
|
||||||||||||||||||| ||||||||||| |||| |||||| ||||||||||||| ||||||| |
|
|
| T |
37879909 |
tccatcacctcattaatcatcatacatccatcttcacaacatagcacgttacatgtaccctccaa |
37879973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 133 - 332
Target Start/End: Original strand, 37916240 - 37916443
Alignment:
| Q |
133 |
ttacaaagaacattattggatgagtgagaaataaaatagagtagccttagcttaaacattctgcattaaacccacctttatacctttatatctgtggtgc |
232 |
Q |
| |
|
||||| ||||||| |||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
37916240 |
ttacatagaacataattgaatgaatgagaaataaaatagagtagccttagcctaaacattctgcattaaacccacctttatacctttatatcaatggtgt |
37916339 |
T |
|
| Q |
233 |
ttaagctctcttt-aactatcttccatcacctcattaatcaacatacatccattttcataacataa---cacgttacatgtatcctccaaagtgaacaaa |
328 |
Q |
| |
|
||||||| |||| ||||||||||||||||||||||||||| |||||| |||| |||| ||||||| |||||| ||||| ||||||||||||||||| |
|
|
| T |
37916340 |
gtaagctccctttcaactatcttccatcacctcattaatcatcatacacccatcttcacaacataataccacgttctatgtaccctccaaagtgaacaaa |
37916439 |
T |
|
| Q |
329 |
gaca |
332 |
Q |
| |
|
|||| |
|
|
| T |
37916440 |
gaca |
37916443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 24 - 75
Target Start/End: Original strand, 37908212 - 37908263
Alignment:
| Q |
24 |
gaaggaatagtcaatgattgaatgatattaatacactcattcaattatggtg |
75 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
37908212 |
gaaggaatagtcaatggctgaatgatattaatacactcattcaattatggtg |
37908263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 74
Target Start/End: Original strand, 37916169 - 37916217
Alignment:
| Q |
25 |
aaggaatagtcaatgattgaatgatattaatacactcattcaattatggt |
74 |
Q |
| |
|
|||||||||||||||| | ||||||||| || |||||||||||||||||| |
|
|
| T |
37916169 |
aaggaatagtcaatgactaaatgatatt-attcactcattcaattatggt |
37916217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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