View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2585_high_3 (Length: 644)
Name: NF2585_high_3
Description: NF2585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2585_high_3 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 304; Significance: 1e-171; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 237 - 628
Target Start/End: Complemental strand, 11631381 - 11630990
Alignment:
| Q |
237 |
gtgaaagatttcgacattttcataatattcccacttaggatttccgcttcagttttgataccatagtagttcatcagatttcccaatttgtagtcataat |
336 |
Q |
| |
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||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |
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| T |
11631381 |
gtgaaagattttgacattttcataatatttccacttaggatttctgcttcagttttgataccatagtagtccatcagatttcccaacttgtagtcataat |
11631282 |
T |
|
| Q |
337 |
tggttttgtgatagaaggcattgtcaacataatccataaatccgtcgaattccatgcccaaatcataggactctttagccacttccaacgtgaaggatgt |
436 |
Q |
| |
|
|||||||||||||||| |||| |||||||||||||||||| || |||||||||||| | |||||||||||||||||||||||||||| ||||| ||||| |
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| T |
11631281 |
tggttttgtgatagaatgcatcgtcaacataatccataaagccctcgaattccatgtcggaatcataggactctttagccacttccaatgtgaaagatgt |
11631182 |
T |
|
| Q |
437 |
aacagagccgtcctttgttgaaatactttgaatttcccgaaaaagttttccaattacattctttgatttgcaggtaggtttgtcaggcttctccatgaaa |
536 |
Q |
| |
|
|| ||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||| || |||||||||||||||||||||||||| |
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| T |
11631181 |
aatagagccgtcctttgttgaaataccttgaatttccctaaaaagttttcctattacattctttgatttgtagataggtttgtcaggcttctccatgaaa |
11631082 |
T |
|
| Q |
537 |
tctggatattctgtggggaaaagacgacgaggtatttctgctgggatacctgtttttggaaagtcaactgctgttgagaatagctttgcaag |
628 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11631081 |
tctggatattctgtggggaaaagaccacgaggtatttctgctgggataccggtttttggaaagtcaactgctgttgagaatagctttgcaag |
11630990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 236 - 629
Target Start/End: Original strand, 11675259 - 11675652
Alignment:
| Q |
236 |
ggtgaaagatttcgacattttcataatattcccacttaggatttccgcttcagttttgataccatagtagttcatcagatttcccaatttgtagtcataa |
335 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||| |||||||||||| |
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|
| T |
11675259 |
ggtgaaagatttcgacattttcataatattcccacttaggatttctgattcagttttgataccatagtagtccatcagatttcccaacttgtagtcataa |
11675358 |
T |
|
| Q |
336 |
ttggttttgtgatagaaggcattgtcaacataatccataaatccgtcgaattccatgcccaaatcataggactctttagccacttccaacgtgaaggatg |
435 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||||||||||| || ||||||||||| || ||||||| ||||| ||||||||||| | || ||||||| |
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| T |
11675359 |
ttggttttgtgatagaaggcatcgtcgacataatccataaagccctcgaattccatatccgaatcatatgactccttagccacttcaagtgtaaaggatg |
11675458 |
T |
|
| Q |
436 |
taacagagccgtcctttgttgaaatactttgaatttcccgaaaaagttttccaattacattctttgatttgcaggtaggtttgtcaggcttctccatgaa |
535 |
Q |
| |
|
||| ||| || ||| |||||||||| ||||||||||| |||||||||||| |||||||||||||||||| |||| | |||||||||||| |||||||| |
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| T |
11675459 |
taagagaaccaccctcagttgaaataccttgaatttccctaaaaagttttcctattacattctttgatttgtaggtggttttgtcaggcttttccatgaa |
11675558 |
T |
|
| Q |
536 |
atctggatattctgtggggaaaagacgacgaggtatttctgctgggatacctgtttttggaaagtcaactgctgttgagaatagctttgcaagt |
629 |
Q |
| |
|
|||||||||||| ||| ||||||| || | ||||| ||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||| |
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|
| T |
11675559 |
gtctggatattctttggcgaaaagatgagggggtataactgctgggataccggtttttggaaaatcaactgctattgagaatagctttgcaagt |
11675652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 236 - 628
Target Start/End: Complemental strand, 11640144 - 11639752
Alignment:
| Q |
236 |
ggtgaaagatttcgacattttcataatattcccacttaggatttccgcttcagttttgataccatagtagttcatcagatttcccaatttgtagtcataa |
335 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||||| |||||||| | ||||||||||||||||||||||| ||||||||||||||| || | |||||| |
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|
| T |
11640144 |
ggtgaaagatttagccattttcataatattcccactgaggatttctgattcagttttgataccatagtagtccatcagatttcccaacttctcatcataa |
11640045 |
T |
|
| Q |
336 |
ttggttttgtgatagaaggcattgtcaacataatccataaatccgtcgaattccatgcccaaatcataggactctttagccacttccaacgtgaaggatg |
435 |
Q |
| |
|
|||| ||||| |||||||||| || ||||||||||||||||| || | ||||||| | |||||| |||| |||||||||||||| |||||||||| |
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|
| T |
11640044 |
ttggatttgtagtagaaggcatcatcgacataatccataaatccatcaacttccatgtcgggatcatatgactttttagccacttccagtgtgaaggatg |
11639945 |
T |
|
| Q |
436 |
taacagagccgtcctttgttgaaatactttgaatttcccgaaaaagttttccaattacattctttgatttgcaggtaggtttgtcaggcttctccatgaa |
535 |
Q |
| |
|
||| |||||||||||||||||||| | ||||||||||| ||| |||||||| |||||||| | ||||||| | || | |||||||| |||||||||||| |
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|
| T |
11639944 |
taatggagccgtcctttgttgaaattccttgaatttccctaaacagttttcctattacattatctgatttgtatgttgttttgtcagccttctccatgaa |
11639845 |
T |
|
| Q |
536 |
atctggatattctgtggggaaaagacgacgaggtatttctgctgggatacctgtttttggaaagtcaactgctgttgagaatagctttgcaag |
628 |
Q |
| |
|
||||||||||||| ||| |||||| ||||||||| | ||||||||||| || |||||||||||||||||| ||||||||||||||||||| |
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|
| T |
11639844 |
atctggatattctttggcgaaaagttcacgaggtataacggctgggataccagtctttggaaagtcaactgctattgagaatagctttgcaag |
11639752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 236 - 548
Target Start/End: Original strand, 11682746 - 11683058
Alignment:
| Q |
236 |
ggtgaaagatttcgacattttcataatattcccacttaggatttccgcttcagttttgataccatagtagttcatcagatttcccaatttgtagtcataa |
335 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | |||||| | ||||||||||||||||||||||| ||||||||||||||| |||||||||||| |
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|
| T |
11682746 |
ggtgaaagatttcgacattttcataatattcccactaatgatttctgattcagttttgataccatagtagtccatcagatttcccaacttgtagtcataa |
11682845 |
T |
|
| Q |
336 |
ttggttttgtgatagaaggcattgtcaacataatccataaatccgtcgaattccatgcccaaatcataggactctttagccacttccaacgtgaaggatg |
435 |
Q |
| |
|
||||||||||||||||| |||| ||| ||||||||||||| || |||||||||| | ||||| ||||||||||||||||| | |||||||||| |
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|
| T |
11682846 |
ttggttttgtgatagaaagcatcgtcggcataatccataaagcccacgaattccatatctggatcatgtgactctttagccacttcaagtgtgaaggatg |
11682945 |
T |
|
| Q |
436 |
taacagagccgtcctttgttgaaatactttgaatttcccgaaaaagttttccaattacattctttgatttgcaggtaggtttgtcaggcttctccatgaa |
535 |
Q |
| |
|
||| ||| ||||| ||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||| |||| | |||||||||||| |||||||| |
|
|
| T |
11682946 |
taatagaaccgtcatttgttgaaataccttgaatttccctaaaaagttttcctattacattctttgatttgtaggtggttttgtcaggcttttccatgaa |
11683045 |
T |
|
| Q |
536 |
atctggatattct |
548 |
Q |
| |
|
|||||||||||| |
|
|
| T |
11683046 |
gtctggatattct |
11683058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 148; E-Value: 9e-78
Query Start/End: Original strand, 22 - 237
Target Start/End: Original strand, 11675003 - 11675218
Alignment:
| Q |
22 |
tggctctctccttcttgatttggacaactaaatggtaaacacaccatggaaagcttagaaaatggtcccttttcataacctaattgtataaaccaaaata |
121 |
Q |
| |
|
||||| ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| | | |||||| |||||| | || |
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|
| T |
11675003 |
tggctttctccttcttgatttggacaagcagatggtaaacacaccatggaaagcttagaaaatggtcccttttcataccttcattgtacaaaccatagta |
11675102 |
T |
|
| Q |
122 |
actttgatggtaagtaacatagtaccaagcagaagcttttgcataagcatcatcgctcccagaatctacatcagccccgccgtcatcgaaccaactcctc |
221 |
Q |
| |
|
||| |||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| | ||||||| ||||||||||||| |
|
|
| T |
11675103 |
actatgatggtaagaaacatagtaccaagcagaagcttttgcataagcatcatcactcccagcatctacatcagccgcaccgtcattgaaccaactcctc |
11675202 |
T |
|
| Q |
222 |
gcctctttccttaggg |
237 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
11675203 |
gcctctttccttaggg |
11675218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 22 - 237
Target Start/End: Complemental strand, 11631638 - 11631423
Alignment:
| Q |
22 |
tggctctctccttcttgatttggacaactaaatggtaaacacaccatggaaagcttagaaaatggtcccttttcataacctaattgtataaaccaaaata |
121 |
Q |
| |
|
||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||| | | |||||| |||||| | || |
|
|
| T |
11631638 |
tggctttctccttcttaatttggacaagcaaatggtaaacacaccatggaaagcttagaaaatggtccctctgcataccttcattgtacaaaccatagta |
11631539 |
T |
|
| Q |
122 |
actttgatggtaagtaacatagtaccaagcagaagcttttgcataagcatcatcgctcccagaatctacatcagccccgccgtcatcgaaccaactcctc |
221 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||| |||| |||||||||||| |
|
|
| T |
11631538 |
actatgatggtaagtaacatagtaccaagcagaagcttttgcatatgcatcatcactcccagaatctacaccagccccgctgtcagtgaaccaactcctt |
11631439 |
T |
|
| Q |
222 |
gcctctttccttaggg |
237 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
11631438 |
gcctctttccttaggg |
11631423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 22 - 237
Target Start/End: Complemental strand, 11640400 - 11640185
Alignment:
| Q |
22 |
tggctctctccttcttgatttggacaactaaatggtaaacacaccatggaaagcttagaaaatggtcccttttcataacctaattgtataaaccaaaata |
121 |
Q |
| |
|
||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||| | | |||||| |||||| | || |
|
|
| T |
11640400 |
tggctttctccttcttgatttggacaagcaaatggtaaacacaccatggaaagcttagaaaatggtccctctgcataccttcattgtacaaaccatagta |
11640301 |
T |
|
| Q |
122 |
actttgatggtaagtaacatagtaccaagcagaagcttttgcataagcatcatcgctcccagaatctacatcagccccgccgtcatcgaaccaactcctc |
221 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||| ||| || | ||| |||| ||||||||||||| |
|
|
| T |
11640300 |
actatgatggtaagtaacatagtaccaagcagaagcttttgcatatgcatcatcacttccagaatcaacactggcactgccatcattgaaccaactcctc |
11640201 |
T |
|
| Q |
222 |
gcctctttccttaggg |
237 |
Q |
| |
|
|||||||| ||||||| |
|
|
| T |
11640200 |
gcctcttttcttaggg |
11640185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 453 - 629
Target Start/End: Original strand, 11683060 - 11683236
Alignment:
| Q |
453 |
gttgaaatactttgaatttcccgaaaaagttttccaattacattctttgatttgcaggtaggtttgtcaggcttctccatgaaatctggatattctgtgg |
552 |
Q |
| |
|
|||||||||| ||||||||||| |||||||||||| |||||||||||||||||| |||| | |||||||||||| |||||||| |||||||||||| ||| |
|
|
| T |
11683060 |
gttgaaataccttgaatttccctaaaaagttttcctattacattctttgatttgtaggtggttttgtcaggcttttccatgaagtctggatattctttgg |
11683159 |
T |
|
| Q |
553 |
ggaaaagacgacgaggtatttctgctgggatacctgtttttggaaagtcaactgctgttgagaatagctttgcaagt |
629 |
Q |
| |
|
|||||| || ||||||| ||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
11683160 |
caaaaagatgaggaggtataactgctgggataccggtttttggaaaatcaactgctactgagaatagctttgcaagt |
11683236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 28 - 237
Target Start/End: Original strand, 11682496 - 11682705
Alignment:
| Q |
28 |
tctccttcttgatttggacaactaaatggtaaacacaccatggaaagcttagaaaatggtcccttttcataacctaattgtataaaccaaaataactttg |
127 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||| | | |||||| |||||| | ||||| || |
|
|
| T |
11682496 |
tctccttcttgatttggacaagcaaatggtaaacacaccatggaaagcttagaaaatggtccctctgcataccttcattgtacaaaccatagtaactatg |
11682595 |
T |
|
| Q |
128 |
atggtaagtaacatagtaccaagcagaagcttttgcataagcatcatcgctcccagaatctacatcagccccgccgtcatcgaaccaactcctcgcctct |
227 |
Q |
| |
|
||||||||||||| | ||||||||||||||||||||||| | | ||| |||||||||||| || ||| | | |||| ||||||||||||||||||| |
|
|
| T |
11682596 |
atggtaagtaacaaaataccaagcagaagcttttgcatatggacaatcactcccagaatctgcaccagtattgtcttcattgaaccaactcctcgcctct |
11682695 |
T |
|
| Q |
228 |
ttccttaggg |
237 |
Q |
| |
|
|||| ||||| |
|
|
| T |
11682696 |
ttccgtaggg |
11682705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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