View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2585_high_30 (Length: 357)
Name: NF2585_high_30
Description: NF2585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2585_high_30 |
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Alignment Details
Target: chr2 (Bit Score: 125; Significance: 3e-64; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 143 - 336
Target Start/End: Complemental strand, 2130861 - 2130671
Alignment:
| Q |
143 |
tttattgaatgtgtgtctaagtaagtgttgttcagaaaggggtttacacccaactttttggattacatattagtatgaaattttcactaccgtttatgtg |
242 |
Q |
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| T |
2130861 |
tttattgaatgtgtgtctaagt----gttgttcagaaagggatttacacccaactttttggattacatattggtatgaaattttcactaccgtttatgtg |
2130766 |
T |
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| Q |
243 |
tttaa-nnnnnnngggaaacctttgaggtacataaagtgtgatcgtcatttctaattgagttttattggaacacaaaagttagagatcaaaccta |
336 |
Q |
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| T |
2130765 |
tttaattttttttgggaaacctttgaggtacacaaggtgtgatcgtcctttctaattgagttttattggaacataaaagttagagatcaaaccta |
2130671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 2130998 - 2130956
Alignment:
| Q |
1 |
ggtgattaggagtggaaataagagctatacttggttccaatct |
43 |
Q |
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| T |
2130998 |
ggtgatttggagtggaaataagagctatacttggttccaatct |
2130956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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