View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2585_high_32 (Length: 343)
Name: NF2585_high_32
Description: NF2585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2585_high_32 |
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Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 18 - 333
Target Start/End: Original strand, 7803678 - 7803991
Alignment:
| Q |
18 |
ctaattacgtaccttgcattaattactgattaggttaaccctaaatattttcc-tcccaaatgttctgattttgaatttctttggcaaatgttgtggtca |
116 |
Q |
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| T |
7803678 |
ctaattacgtaccttgcattatttactgattaggttaaccccaaatattttccctcccaaatgttctgattttgaatttctttggcaaatgttgtggtca |
7803777 |
T |
|
| Q |
117 |
ttttttgtttaccgtgttgtttgtaaccctttagtgttcca-gcatgcgttttccaagcttnnnnnnntacaacattaattaataagggccttttgactt |
215 |
Q |
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|||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| | |||||| |||| ||||||||||||||||| |
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| T |
7803778 |
ttttttgtttgccgtgttgtttgtaaccctttagtgttccatgcatgcgttttccaagcataaaaaaatacaac----attagtaagggccttttgactt |
7803873 |
T |
|
| Q |
216 |
ccttatagaaaaccagaacagccatcaactctgattcatactctatttcccatgcctattggcacattcatccaacctaattcactcaatataaatgcat |
315 |
Q |
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| T |
7803874 |
ccatctagaaaaccagaacaaccatcaactcttattcatactctatttcccatgcctattggcacattcatccaacctaattcactcaatataaatgcat |
7803973 |
T |
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| Q |
316 |
gcactattatgtcctttg |
333 |
Q |
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|| |||| |||||||||| |
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| T |
7803974 |
gcgctatgatgtcctttg |
7803991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 18 - 333
Target Start/End: Original strand, 7833076 - 7833386
Alignment:
| Q |
18 |
ctaattacgtaccttgcattaattactgattaggttaaccctaaatattttcc-tcccaaatgttctgattttgaatttctttggcaaatgttgtggtca |
116 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
7833076 |
ctaattacgtaccttgcattaattactgattagattaaccctaaatattttccctcccaaatgttctaattttgaatttctttggcaaatgttgtggtca |
7833175 |
T |
|
| Q |
117 |
ttttttgtttaccgtgttgtttgtaaccctttagtgttcca-gcatgcgttttccaagcttnnnnnnntacaacattaattaataagggccttttgactt |
215 |
Q |
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||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||| |||||||| ||||||||||||| |
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| T |
7833176 |
ttttttgtttaccgtgttgtttgtaaccctttactgttccacgcatgcgttttccaagcttaaaaaaatacaac----attaataatggccttttgactt |
7833271 |
T |
|
| Q |
216 |
ccttatagaaaaccagaacagccatcaactctgattcatactctatttcccatgcctattggcacattcatccaacctaattcactcaatataaatgcat |
315 |
Q |
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|| | ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
7833272 |
ccatctagaaaaccagaa---ccatcaactctgattcatactctatttcccatgcctattggcgcattcatccaacctaattcactcaatataaatgcat |
7833368 |
T |
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| Q |
316 |
gcactattatgtcctttg |
333 |
Q |
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|||||||||| ||||||| |
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| T |
7833369 |
gcactattatttcctttg |
7833386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 212 - 333
Target Start/End: Original strand, 7783802 - 7783923
Alignment:
| Q |
212 |
acttccttatagaaaaccagaacagccatcaactctgattcatactctatttcccatgcctattggcacattcatccaacctaattcactcaatataaat |
311 |
Q |
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|||||| | ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7783802 |
acttccatctagaaaaccagaacaaccatcaactcttattcatactctatttcccatgcctattggcacattcatccaacctaattcactcaatataaat |
7783901 |
T |
|
| Q |
312 |
gcatgcactattatgtcctttg |
333 |
Q |
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|||| ||||||||||||||||| |
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| T |
7783902 |
gcatacactattatgtcctttg |
7783923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 256 - 333
Target Start/End: Complemental strand, 17295074 - 17294997
Alignment:
| Q |
256 |
ctctatttcccatgcctattggcacattcatccaacctaattcactcaatataaatgcatgcactattatgtcctttg |
333 |
Q |
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|||||||||||| |||| |||||| |||||||||||||||||||||| || |||| |||||||||||| ||||||| |
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| T |
17295074 |
ctctatttcccacgcctgttggcaaattcatccaacctaattcactcgatgtaaagacatgcactattacctcctttg |
17294997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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