View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2585_high_34 (Length: 335)

Name: NF2585_high_34
Description: NF2585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2585_high_34
NF2585_high_34
[»] chr7 (6 HSPs)
chr7 (3-325)||(9359109-9359431)
chr7 (12-208)||(3964659-3964855)
chr7 (205-324)||(24269167-24269286)
chr7 (215-324)||(3963743-3963852)
chr7 (215-318)||(33337397-33337500)
chr7 (12-88)||(24018277-24018353)
[»] chr2 (6 HSPs)
chr2 (13-208)||(10210873-10211069)
chr2 (13-208)||(23772186-23772380)
chr2 (205-324)||(10211855-10211974)
chr2 (205-324)||(23771225-23771344)
chr2 (223-310)||(27176320-27176407)
chr2 (269-322)||(40075444-40075497)
[»] chr8 (6 HSPs)
chr8 (13-208)||(32285130-32285325)
chr8 (205-322)||(32284216-32284333)
chr8 (121-206)||(26705937-26706022)
chr8 (282-324)||(32576686-32576728)
chr8 (223-310)||(14221200-14221287)
chr8 (178-208)||(10997777-10997807)
[»] chr6 (6 HSPs)
chr6 (13-208)||(7605773-7605968)
chr6 (205-324)||(7606764-7606883)
chr6 (13-208)||(32955017-32955212)
chr6 (205-324)||(7437736-7437855)
chr6 (215-324)||(32956019-32956128)
chr6 (176-208)||(14777334-14777366)
[»] scaffold0004 (2 HSPs)
scaffold0004 (13-208)||(214042-214237)
scaffold0004 (205-324)||(215034-215153)
[»] chr3 (5 HSPs)
chr3 (205-322)||(51193323-51193440)
chr3 (12-206)||(21687395-21687589)
chr3 (205-321)||(21688384-21688500)
chr3 (205-324)||(43019804-43019923)
chr3 (86-208)||(51194237-51194359)
[»] scaffold0011 (2 HSPs)
scaffold0011 (205-324)||(55043-55162)
scaffold0011 (13-206)||(54051-54244)
[»] chr4 (9 HSPs)
chr4 (13-208)||(48444246-48444441)
chr4 (205-324)||(48445238-48445357)
chr4 (12-208)||(26431558-26431754)
chr4 (13-160)||(2542238-2542385)
chr4 (205-324)||(54551179-54551298)
chr4 (205-324)||(26430642-26430761)
chr4 (272-328)||(26007515-26007571)
chr4 (209-252)||(26007571-26007614)
chr4 (160-204)||(29508116-29508160)
[»] chr1 (2 HSPs)
chr1 (13-208)||(46092881-46093076)
chr1 (215-324)||(46091991-46092100)
[»] chr5 (6 HSPs)
chr5 (12-208)||(9611867-9612063)
chr5 (205-316)||(27453938-27454049)
chr5 (215-324)||(9610951-9611060)
chr5 (35-178)||(27454843-27454986)
chr5 (13-179)||(14492914-14493080)
chr5 (70-147)||(27054684-27054761)
[»] scaffold0016 (1 HSPs)
scaffold0016 (215-324)||(185721-185830)
[»] scaffold0577 (2 HSPs)
scaffold0577 (110-208)||(4554-4652)
scaffold0577 (215-324)||(3648-3757)
[»] scaffold0607 (1 HSPs)
scaffold0607 (249-324)||(4286-4361)


Alignment Details
Target: chr7 (Bit Score: 303; Significance: 1e-170; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 3 - 325
Target Start/End: Original strand, 9359109 - 9359431
Alignment:
Q  3 atttgctctcaatgttgtgtataaaattgtagtcaaggtgctcgcaaataggctcaaacatgtgctcgataagtgtatttctattaatcagtcatctttt 102  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9359109 atttgctctcaatgttgggtataaaattgtagtcaaggtgctcgcaaataggctcaaacatgtgctcgataagtgtatttctattaatcagtcatctttt 9359208  T
Q  103 gtcccatgaaggtccatcttagataatacaatagtggctattgaaattgtacactatatgaaggcaaaaactaaaggaaagagtggagatgttgcactta 202  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  9359209 gtcccatgaaggtccatcttagataatgcaatagtggctattgaaattgtacactatatgaaggcaaaaactaaaggaaaaagtggagatgttgcactta 9359308  T
Q  203 agttgggaacacctttcagttcctaaggtgtttggaggtatggattttaagggccttaagactttcaatatggctatggttgggaagcaggcttggaagt 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||    
T  9359309 agttgggaacacctttcagttcctaaggtgtttggaggtatggattttaagggtcttaaggctttcaatatggctatggttgggaagcaggcttggaagt 9359408  T
Q  303 tggtttcttctccagagtctctg 325  Q
    |||||||||||||||||||||||    
T  9359409 tggtttcttctccagagtctctg 9359431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 12 - 208
Target Start/End: Complemental strand, 3964855 - 3964659
Alignment:
Q  12 caatgttgtgtataaaattgtagtcaaggtgctcgcaaataggctcaaacatgtgctcgataagtgtatttctattaatcagtcatcttttgtcccatga 111  Q
    ||||||||| || ||||| |||| ||| ||||| || || ||||||||||| || || ||||| ||||| ||||||||||||||| ||||||| ||| |     
T  3964855 caatgttgtatacaaaatagtagccaaagtgcttgctaacaggctcaaacaggtactagataaatgtatctctattaatcagtcagcttttgtaccaggt 3964756  T
Q  112 aggtccatcttagataatacaatagtggctattgaaattgtacactatatgaaggcaaaaactaaaggaaagagtggagatgttgcacttaagttgg 208  Q
     | || |||||||| ||| |||| ||||||||||||||||| |||||||||||||| ||  | ||||| ||||||| ||||||||||||||||||||    
T  3964755 cgatctatcttagacaatgcaatggtggctattgaaattgttcactatatgaaggctaaggcaaaaggtaagagtgaagatgttgcacttaagttgg 3964659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 205 - 324
Target Start/End: Complemental strand, 24269286 - 24269167
Alignment:
Q  205 ttgggaacacctttcagttcctaaggtgtttggaggtatggattttaagggccttaagactttcaatatggctatggttgggaagcaggcttggaagttg 304  Q
    ||||| || ||||||||||||||||||||||||| | |||| |||||||||||| ||| | |||||||||||||||||||| ||| ||||||||||||||    
T  24269286 ttggggacgcctttcagttcctaaggtgtttggatgaatgggttttaagggcctcaaggcattcaatatggctatggttggcaagtaggcttggaagttg 24269187  T
Q  305 gtttcttctccagagtctct 324  Q
    |||||||||||| |||||||    
T  24269186 gtttcttctccaaagtctct 24269167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 215 - 324
Target Start/End: Complemental strand, 3963852 - 3963743
Alignment:
Q  215 ctttcagttcctaaggtgtttggaggtatggattttaagggccttaagactttcaatatggctatggttgggaagcaggcttggaagttggtttcttctc 314  Q
    ||||||||||| ||||| | |||||||||||   |||||||||||||| | || ||||||||||||||||| ||||||||||||||||||||||||||||    
T  3963852 ctttcagttccaaaggtatatggaggtatgggagttaagggccttaaggcctttaatatggctatggttggtaagcaggcttggaagttggtttcttctc 3963753  T
Q  315 cagagtctct 324  Q
    ||||||||||    
T  3963752 cagagtctct 3963743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 215 - 318
Target Start/End: Complemental strand, 33337500 - 33337397
Alignment:
Q  215 ctttcagttcctaaggtgtttggaggtatggattttaagggccttaagactttcaatatggctatggttgggaagcaggcttggaagttggtttcttctc 314  Q
    ||||| ||||||||| ||||||| || |||| |||||||||||||||  | || |||||||| |||||||| |||| |  |||||||||||||||| |||    
T  33337500 ctttccgttcctaagatgtttggtggaatgggttttaagggccttaaagcatttaatatggcgatggttggcaagcggatttggaagttggtttctactc 33337401  T
Q  315 caga 318  Q
    ||||    
T  33337400 caga 33337397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 88
Target Start/End: Original strand, 24018277 - 24018353
Alignment:
Q  12 caatgttgtgtataaaattgtagtcaaggtgctcgcaaataggctcaaacatgtgctcgataagtgtatttctatta 88  Q
    ||||||||||||||| ||||||| |||||| ||   |||||| || |||||||||   ||||||||||| |||||||    
T  24018277 caatgttgtgtataagattgtagccaaggttcttataaatagacttaaacatgtgtaggataagtgtatgtctatta 24018353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 113; Significance: 3e-57; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 13 - 208
Target Start/End: Original strand, 10210873 - 10211069
Alignment:
Q  13 aatgttgtgtataaaattgtagtcaaggtgctcgc-aaataggctcaaacatgtgctcgataagtgtatttctattaatcagtcatcttttgtcccatga 111  Q
    |||||||| ||||||||||||| ||||||||| |  ||||||||||||||| ||||| |||||||||||||  ||| |||||||| |||||||||||  |    
T  10210873 aatgttgtctataaaattgtagccaaggtgcttggtaaataggctcaaacaggtgcttgataagtgtattttcattcatcagtcagcttttgtcccagaa 10210972  T
Q  112 aggtccatcttagataatacaatagtggctattgaaattgtacactatatgaaggcaaaaactaaaggaaagagtggagatgttgcacttaagttgg 208  Q
    || ||||||||||||||| |||| ||||| ||||||||||| |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||    
T  10210973 agatccatcttagataatgcaatggtggccattgaaattgttcactatatgaaggcaaaagctaaaggaaagagtgaagatgttgcacttaagttgg 10211069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 13 - 208
Target Start/End: Complemental strand, 23772380 - 23772186
Alignment:
Q  13 aatgttgtgtataaaattgtagtcaaggtgctcgcaaataggctcaaacatgtgctcgataagtgtatttctattaatcagtcatcttttgtcccatgaa 112  Q
    |||||||||||||||||||||| ||||||||| || |||||||||||||| ||||||||||| ||||||||||||||||| ||| ||||||||| | |      
T  23772380 aatgttgtgtataaaattgtagccaaggtgcttgctaataggctcaaacaggtgctcgataaatgtatttctattaatcaatcagcttttgtcctaggtc 23772281  T
Q  113 ggtccatcttagataatacaatagtggctattgaaattgtacactatatgaaggcaaaaactaaaggaaagagtggagatgttgcacttaagttgg 208  Q
    | ||||| ||||| ||| | || ||||||||||||||||| |||||||||||||||||  | ||||||||||  || |||||||||||||||||||    
T  23772280 gatccattttagacaatgccatggtggctattgaaattgttcactatatgaaggcaaaggccaaaggaaaga-aggggatgttgcacttaagttgg 23772186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 205 - 324
Target Start/End: Original strand, 10211855 - 10211974
Alignment:
Q  205 ttgggaacacctttcagttcctaaggtgtttggaggtatggattttaagggccttaagactttcaatatggctatggttgggaagcaggcttggaagttg 304  Q
    |||||| | ||||| ||||||||||||||||||||| |||| |||||||||||| ||| | |||||||||||||||||||| ||||||||||||||||||    
T  10211855 ttgggagcgccttttagttcctaaggtgtttggaggaatgggttttaagggcctcaaggcattcaatatggctatggttggcaagcaggcttggaagttg 10211954  T
Q  305 gtttcttctccagagtctct 324  Q
    ||||||||||||||||||||    
T  10211955 gtttcttctccagagtctct 10211974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 205 - 324
Target Start/End: Complemental strand, 23771344 - 23771225
Alignment:
Q  205 ttgggaacacctttcagttcctaaggtgtttggaggtatggattttaagggccttaagactttcaatatggctatggttgggaagcaggcttggaagttg 304  Q
    |||||||| ||||||||||| ||||||||||||||||||||  || ||||| |||||| ||||||||| |||||||||||| ||||||||||||||||||    
T  23771344 ttgggaacgcctttcagttcttaaggtgtttggaggtatgggcttcaagggacttaaggctttcaatagggctatggttggcaagcaggcttggaagttg 23771245  T
Q  305 gtttcttctccagagtctct 324  Q
    ||||||||||||||||||||    
T  23771244 gtttcttctccagagtctct 23771225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 223 - 310
Target Start/End: Original strand, 27176320 - 27176407
Alignment:
Q  223 tcctaaggtgtttggaggtatggattttaagggccttaagactttcaatatggctatggttgggaagcaggcttggaagttggtttct 310  Q
    ||||||||||||||| || |||  ||||||| |  ||||| |||| ||||||||||||||||| ||||||| ||| ||||| ||||||    
T  27176320 tcctaaggtgtttggtggaatgtgttttaagagttttaaggcttttaatatggctatggttggcaagcaggtttgcaagtttgtttct 27176407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 322
Target Start/End: Complemental strand, 40075497 - 40075444
Alignment:
Q  269 aatatggctatggttgggaagcaggcttggaagttggtttcttctccagagtct 322  Q
    ||||||| ||||||||  ||| ||||||||||||||||||||  ||||||||||    
T  40075497 aatatggttatggttgacaaggaggcttggaagttggtttctaatccagagtct 40075444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 108; Significance: 3e-54; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 13 - 208
Target Start/End: Complemental strand, 32285325 - 32285130
Alignment:
Q  13 aatgttgtgtataaaattgtagtcaaggtgctcgcaaataggctcaaacatgtgctcgataagtgtatttctattaatcagtcatcttttgtcccatgaa 112  Q
    |||||||||||||||||||||||||||||||| || |||||||||||| | ||||||||||| || |||||||||||||||||| ||||||||| | |      
T  32285325 aatgttgtgtataaaattgtagtcaaggtgcttgctaataggctcaaaaaggtgctcgataaatgcatttctattaatcagtcagcttttgtcctaggtt 32285226  T
Q  113 ggtccatcttagataatacaatagtggctattgaaattgtacactatatgaaggcaaaaactaaaggaaagagtggagatgttgcacttaagttgg 208  Q
    | ||||| ||||| ||| | || ||||||||||||||||| || ||||||||||||||  |||||||||||||||| |||||||||||||||||||    
T  32285225 gatccattttagacaatgccatggtggctattgaaattgttcattatatgaaggcaaaggctaaaggaaagagtggggatgttgcacttaagttgg 32285130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 205 - 322
Target Start/End: Complemental strand, 32284333 - 32284216
Alignment:
Q  205 ttgggaacacctttcagttcctaaggtgtttggaggtatggattttaagggccttaagactttcaatatggctatggttgggaagcaggcttggaagttg 304  Q
    |||||||| |||||||||||||||||||||||||||||||  |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  32284333 ttgggaacgcctttcagttcctaaggtgtttggaggtatgagttttaagggccttaaggctttcaatatggctatggttggcaagcaggcttggaagttg 32284234  T
Q  305 gtttcttctccagagtct 322  Q
    ||||||||||||||||||    
T  32284233 gtttcttctccagagtct 32284216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 121 - 206
Target Start/End: Original strand, 26705937 - 26706022
Alignment:
Q  121 ttagataatacaatagtggctattgaaattgtacactatatgaaggcaaaaactaaaggaaagagtggagatgttgcacttaagtt 206  Q
    ||||| ||||| || ||||| ||||||||||| ||| |||||||||||||  ||| ||||| |||||| |||||||||||||||||    
T  26705937 ttagacaataccatggtggcgattgaaattgttcaccatatgaaggcaaaggctacaggaaggagtggggatgttgcacttaagtt 26706022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 282 - 324
Target Start/End: Original strand, 32576686 - 32576728
Alignment:
Q  282 ttgggaagcaggcttggaagttggtttcttctccagagtctct 324  Q
    |||| ||||||| ||||||||||||||||||||||||||||||    
T  32576686 ttggtaagcaggtttggaagttggtttcttctccagagtctct 32576728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 223 - 310
Target Start/End: Complemental strand, 14221287 - 14221200
Alignment:
Q  223 tcctaaggtgtttggaggtatggattttaagggccttaagactttcaatatggctatggttgggaagcaggcttggaagttggtttct 310  Q
    ||||||| ||||||| || |||| ||||||| |  ||||||| || ||||||||||||||||| |||||  |||| |||||| |||||    
T  14221287 tcctaagatgtttggtggaatgggttttaagagttttaagacatttaatatggctatggttggcaagcaatcttgaaagttgatttct 14221200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 208
Target Start/End: Original strand, 10997777 - 10997807
Alignment:
Q  178 ggaaagagtggagatgttgcacttaagttgg 208  Q
    |||||||||||||||||||||||||||||||    
T  10997777 ggaaagagtggagatgttgcacttaagttgg 10997807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 104; Significance: 8e-52; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 13 - 208
Target Start/End: Original strand, 7605773 - 7605968
Alignment:
Q  13 aatgttgtgtataaaattgtagtcaaggtgctcgcaaataggctcaaacatgtgctcgataagtgtatttctattaatcagtcatcttttgtcccatgaa 112  Q
    |||||||||||||||||||||||||||||||| |  ||||||||||||||  |||||||||| || |||||||||||||||||| ||||||||||| |      
T  7605773 aatgttgtgtataaaattgtagtcaaggtgcttgttaataggctcaaacagatgctcgataaatgcatttctattaatcagtcagcttttgtcccaggtc 7605872  T
Q  113 ggtccatcttagataatacaatagtggctattgaaattgtacactatatgaaggcaaaaactaaaggaaagagtggagatgttgcacttaagttgg 208  Q
    | ||||| ||||| ||| | || ||||||||||||||||| ||||||||||||| |||  ||||||||||||||||  ||||||||||||||||||    
T  7605873 gatccattttagacaatgccatggtggctattgaaattgttcactatatgaaggaaaaggctaaaggaaagagtgggaatgttgcacttaagttgg 7605968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 205 - 324
Target Start/End: Original strand, 7606764 - 7606883
Alignment:
Q  205 ttgggaacacctttcagttcctaaggtgtttggaggtatggattttaagggccttaagactttcaatatggctatggttgggaagcaggcttggaagttg 304  Q
    |||||||| ||||||||||||||| |||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |||||| |||||||||||    
T  7606764 ttgggaacgcctttcagttcctaatgtgtttggaggtatgggttttaagggccttaaggctttcaatatggctatggttggcaagcagacttggaagttg 7606863  T
Q  305 gtttcttctccagagtctct 324  Q
    ||||||||||||||||||||    
T  7606864 gtttcttctccagagtctct 7606883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 13 - 208
Target Start/End: Original strand, 32955017 - 32955212
Alignment:
Q  13 aatgttgtgtataaaattgtagtcaaggtgctcgcaaataggctcaaacatgtgctcgataagtgtatttctattaatcagtcatcttttgtcccatgaa 112  Q
    ||||||||||||||||| |||| ||| ||||| || || ||||| ||||| ||||||||||| ||||| ||||||||||||||| ||||||||||| |      
T  32955017 aatgttgtgtataaaatagtagccaaagtgcttgctaacaggcttaaacaggtgctcgataaatgtatctctattaatcagtcagcttttgtcccaggtc 32955116  T
Q  113 ggtccatcttagataatacaatagtggctattgaaattgtacactatatgaaggcaaaaactaaaggaaagagtggagatgttgcacttaagttgg 208  Q
    | || |||||||| ||| |||| ||||||||||||||||| |||||||||||||| ||  | ||||| ||||||||||||||||||||||||||||    
T  32955117 gatctatcttagacaatgcaatggtggctattgaaattgttcactatatgaaggctaaggcaaaaggtaagagtggagatgttgcacttaagttgg 32955212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 205 - 324
Target Start/End: Complemental strand, 7437855 - 7437736
Alignment:
Q  205 ttgggaacacctttcagttcctaaggtgtttggaggtatggattttaagggccttaagactttcaatatggctatggttgggaagcaggcttggaagttg 304  Q
    |||| ||| |||||||||||||||||||||||||||||||| |||||| ||||||||| |||||||||||||||||||||| |||||||||||||||||     
T  7437855 ttggaaacgcctttcagttcctaaggtgtttggaggtatgggttttaaaggccttaaggctttcaatatggctatggttggaaagcaggcttggaagtta 7437756  T
Q  305 gtttcttctccagagtctct 324  Q
    ||||||||| ||||||||||    
T  7437755 gtttcttctgcagagtctct 7437736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 215 - 324
Target Start/End: Original strand, 32956019 - 32956128
Alignment:
Q  215 ctttcagttcctaaggtgtttggaggtatggattttaagggccttaagactttcaatatggctatggttgggaagcaggcttggaagttggtttcttctc 314  Q
    ||||||||||| ||||| |||||||||||||   |||||||||| ||  | || ||||||||||||||||| ||||||||||||||||||||||||||||    
T  32956019 ctttcagttccaaaggtatttggaggtatgggagttaagggcctcaaagcctttaatatggctatggttggtaagcaggcttggaagttggtttcttctc 32956118  T
Q  315 cagagtctct 324  Q
    ||||||||||    
T  32956119 cagagtctct 32956128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 208
Target Start/End: Complemental strand, 14777366 - 14777334
Alignment:
Q  176 aaggaaagagtggagatgttgcacttaagttgg 208  Q
    ||||||| |||||||||||||||||||||||||    
T  14777366 aaggaaaaagtggagatgttgcacttaagttgg 14777334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 13 - 208
Target Start/End: Original strand, 214042 - 214237
Alignment:
Q  13 aatgttgtgtataaaattgtagtcaaggtgctcgcaaataggctcaaacatgtgctcgataagtgtatttctattaatcagtcatcttttgtcccatgaa 112  Q
    |||||||||||||||||||||| ||||||||| || |||||||||||||| ||||| ||||| || ||||||||||||||||||  |||||||||| |      
T  214042 aatgttgtgtataaaattgtagccaaggtgcttgctaataggctcaaacaggtgcttgataaatgcatttctattaatcagtcaggttttgtcccaggtc 214141  T
Q  113 ggtccatcttagataatacaatagtggctattgaaattgtacactatatgaaggcaaaaactaaaggaaagagtggagatgttgcacttaagttgg 208  Q
    | ||||| ||||| ||| | || ||||||||||||||||| || ||||||||||||||  |||||||||||||||| |||||||||||||| ||||    
T  214142 gatccattttagacaatgccatggtggctattgaaattgttcattatatgaaggcaaaggctaaaggaaagagtggggatgttgcacttaaattgg 214237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 205 - 324
Target Start/End: Original strand, 215034 - 215153
Alignment:
Q  205 ttgggaacacctttcagttcctaaggtgtttggaggtatggattttaagggccttaagactttcaatatggctatggttgggaagcaggcttggaagttg 304  Q
    |||||||| ||||||| |||||||||||||||||| ||||| ||||||||| ||||||  ||| ||||||||||||||||| ||||||||||||||||||    
T  215034 ttgggaacgcctttcaattcctaaggtgtttggagctatgggttttaagggacttaaggattttaatatggctatggttggcaagcaggcttggaagttg 215133  T
Q  305 gtttcttctccagagtctct 324  Q
    ||||||  ||||||||||||    
T  215134 gtttctgatccagagtctct 215153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 98; Significance: 3e-48; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 205 - 322
Target Start/End: Complemental strand, 51193440 - 51193323
Alignment:
Q  205 ttgggaacacctttcagttcctaaggtgtttggaggtatggattttaagggccttaagactttcaatatggctatggttgggaagcaggcttggaagttg 304  Q
    |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  51193440 ttgggaacgcctttcagttcctaaggtgtttggaggtatgggttttaagggccttaaggctttcaatatggctatggttggcaagcaggcttggaagttg 51193341  T
Q  305 gtttcttctccagagtct 322  Q
    |||||||||||| |||||    
T  51193340 gtttcttctccaaagtct 51193323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 12 - 206
Target Start/End: Original strand, 21687395 - 21687589
Alignment:
Q  12 caatgttgtgtataaaattgtagtcaaggtgctcgcaaataggctcaaacatgtgctcgataagtgtatttctattaatcagtcatcttttgtcccatga 111  Q
    ||||||||||||||||||||||| ||||||||| || ||||||||||| || ||||| |||||| |||||| |||||||||| || ||||||||||   |    
T  21687395 caatgttgtgtataaaattgtagccaaggtgcttgctaataggctcaagcaggtgcttgataagcgtatttttattaatcagacaacttttgtccctgaa 21687494  T
Q  112 aggtccatcttagataatacaatagtggctattgaaattgtacactatatgaaggcaaaaactaaaggaaagagtggagatgttgcacttaagtt 206  Q
    || || |||||| ||||| |||| ||||  ||||||||||| |||||||||| ||| ||||||||| | ||||||||||||||||||||||||||    
T  21687495 agatctatcttaaataatgcaatggtggtcattgaaattgttcactatatgatggctaaaactaaatggaagagtggagatgttgcacttaagtt 21687589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 205 - 321
Target Start/End: Original strand, 21688384 - 21688500
Alignment:
Q  205 ttgggaacacctttcagttcctaaggtgtttggaggtatggattttaagggccttaagactttcaatatggctatggttgggaagcaggcttggaagttg 304  Q
    |||||||| |||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||||||||||||| ||||||||||||||||||    
T  21688384 ttgggaacgcctttcagttcctaaggtgtttggaggtatgggttttaagggccttgaggctttcaatatggctatggttggcaagcaggcttggaagttg 21688483  T
Q  305 gtttcttctccagagtc 321  Q
    |||||||| ||||||||    
T  21688484 gtttcttcaccagagtc 21688500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 205 - 324
Target Start/End: Complemental strand, 43019923 - 43019804
Alignment:
Q  205 ttgggaacacctttcagttcctaaggtgtttggaggtatggattttaagggccttaagactttcaatatggctatggttgggaagcaggcttggaagttg 304  Q
    |||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||  |||||| ||||||||||||||| ||||||||||||| | |     
T  43019923 ttgggaacgcctctcagttcctaaggtgtttggaggtatgggttttaagggccttaaagctttcagtatggctatggttggcaagcaggcttggaggcta 43019824  T
Q  305 gtttcttctccagagtctct 324  Q
    ||||||||||||||||||||    
T  43019823 gtttcttctccagagtctct 43019804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 86 - 208
Target Start/End: Complemental strand, 51194359 - 51194237
Alignment:
Q  86 ttaatcagtcatcttttgtcccatgaaggtccatcttagataatacaatagtggctattgaaattgtacactatatgaaggcaaaaactaaaggaaagag 185  Q
    ||||||||||| |||||||||||    | ||||| ||||| ||| | || ||||||||||||||||| || ||||||||||||||  |||||||||||||    
T  51194359 ttaatcagtcagcttttgtcccagatcgatccattttagacaatgccatggtggctattgaaattgttcattatatgaaggcaaaggctaaaggaaagag 51194260  T
Q  186 tggagatgttgcacttaagttgg 208  Q
    ||| |||||||||||||||||||    
T  51194259 tggggatgttgcacttaagttgg 51194237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 96; Significance: 5e-47; HSPs: 2)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 205 - 324
Target Start/End: Original strand, 55043 - 55162
Alignment:
Q  205 ttgggaacacctttcagttcctaaggtgtttggaggtatggattttaagggccttaagactttcaatatggctatggttgggaagcaggcttggaagttg 304  Q
    |||||||| |||||||||||||||||||||||||||||| | |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  55043 ttgggaacgcctttcagttcctaaggtgtttggaggtatcggttttaagggccttaaggctttcaatatggctatggttggaaagcaggcttggaagttg 55142  T
Q  305 gtttcttctccagagtctct 324  Q
    |||||||||||||| |||||    
T  55143 gtttcttctccagaatctct 55162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 13 - 206
Target Start/End: Original strand, 54051 - 54244
Alignment:
Q  13 aatgttgtgtataaaattgtagtcaaggtgctcgcaaataggctcaaacatgtgctcgataagtgtatttctattaatcagtcatcttttgtcccatgaa 112  Q
    |||||||||||||||||||||| |||||| || || |||||||||||||| ||||| ||||| ||| ||||||||||||||| | ||||||||||| |      
T  54051 aatgttgtgtataaaattgtagccaaggttcttgctaataggctcaaacaggtgcttgataaatgtgtttctattaatcagtaagcttttgtcccaggtc 54150  T
Q  113 ggtccatcttagataatacaatagtggctattgaaattgtacactatatgaaggcaaaaactaaaggaaagagtggagatgttgcacttaagtt 206  Q
    | ||||| ||||| ||| | || ||||||||||||||||| |||||||||||||||||   ||||||||||||||| ||||||||||| |||||    
T  54151 gatccattttagacaattccatggtggctattgaaattgttcactatatgaaggcaaagtttaaaggaaagagtggggatgttgcactgaagtt 54244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 92; Significance: 1e-44; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 13 - 208
Target Start/End: Original strand, 48444246 - 48444441
Alignment:
Q  13 aatgttgtgtataaaattgtagtcaaggtgctcgcaaataggctcaaacatgtgctcgataagtgtatttctattaatcagtcatcttttgtcccatgaa 112  Q
    |||||||||||||||||||||| ||||||||| || |||||||||||||| |||||| |||| ||||||||||||||||| ||  ||||||||||| |      
T  48444246 aatgttgtgtataaaattgtagccaaggtgcttgctaataggctcaaacaggtgctctataaatgtatttctattaatcaatctgcttttgtcccaagtc 48444345  T
Q  113 ggtccatcttagataatacaatagtggctattgaaattgtacactatatgaaggcaaaaactaaaggaaagagtggagatgttgcacttaagttgg 208  Q
    | ||||| ||||| ||| | || ||||||||||||||||| |||||||||||| ||||  |  |||||||||| || |||||||||||||||||||    
T  48444346 gatccattttagacaatgccatggtggctattgaaattgttcactatatgaagacaaaggccgaaggaaagaggggggatgttgcacttaagttgg 48444441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 205 - 324
Target Start/End: Original strand, 48445238 - 48445357
Alignment:
Q  205 ttgggaacacctttcagttcctaaggtgtttggaggtatggattttaagggccttaagactttcaatatggctatggttgggaagcaggcttggaagttg 304  Q
    |||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||| ||||||||| ||||||| |||| ||||||||||||||||||    
T  48445238 ttgggaacgcctttcagttcctaaggtgtttggaggtatgggtttcaagggccttaaggctttcaatacggctatgtttggcaagcaggcttggaagttg 48445337  T
Q  305 gtttcttctccagagtctct 324  Q
    |||||||||||| |||||||    
T  48445338 gtttcttctccaaagtctct 48445357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 12 - 208
Target Start/End: Complemental strand, 26431754 - 26431558
Alignment:
Q  12 caatgttgtgtataaaattgtagtcaaggtgctcgcaaataggctcaaacatgtgctcgataagtgtatttctattaatcagtcatcttttgtcccatga 111  Q
    ||||||||| || ||||| |||| ||| ||||| || || |||||||||||||| || ||||| ||||| | ||||||||||||| ||||||||||| |     
T  26431754 caatgttgtatacaaaatagtagccaaagtgcttgctaacaggctcaaacatgtactagataaatgtatctttattaatcagtcagcttttgtcccaggt 26431655  T
Q  112 aggtccatcttagataatacaatagtggctattgaaattgtacactatatgaaggcaaaaactaaaggaaagagtggagatgttgcacttaagttgg 208  Q
     | || |||||||| ||| |||| ||||||||||||||||| |||||||||||||| ||  | ||||| ||||||| ||||||||||||||||||||    
T  26431654 cgatctatcttagacaatgcaatggtggctattgaaattgttcactatatgaaggctaaggcaaaaggtaagagtgaagatgttgcacttaagttgg 26431558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 13 - 160
Target Start/End: Original strand, 2542238 - 2542385
Alignment:
Q  13 aatgttgtgtataaaattgtagtcaaggtgctcgcaaataggctcaaacatgtgctcgataagtgtatttctattaatcagtcatcttttgtcccatgaa 112  Q
    |||||||||||||||||||||||||||||||| || |||||| ||||||| || | |||||||||||||| |||||||||||||  ||||||| || |||    
T  2542238 aatgttgtgtataaaattgtagtcaaggtgcttgctaataggttcaaacaggtccccgataagtgtatttgtattaatcagtcaatttttgtctcaggaa 2542337  T
Q  113 ggtccatcttagataatacaatagtggctattgaaattgtacactata 160  Q
    | |||||||| ||||||  ||| ||||| |||||||||||||||||||    
T  2542338 gatccatcttggataatgaaatggtggccattgaaattgtacactata 2542385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 205 - 324
Target Start/End: Original strand, 54551179 - 54551298
Alignment:
Q  205 ttgggaacacctttcagttcctaaggtgtttggaggtatggattttaagggccttaagactttcaatatggctatggttgggaagcaggcttggaagttg 304  Q
    ||||||||  || |||||||||||||| ||||||||||||  ||||||||| |||||| |||||||||| ||||||||||| ||||||||||||||||||    
T  54551179 ttgggaacgtctgtcagttcctaaggtttttggaggtatgtgttttaagggtcttaaggctttcaatatagctatggttggcaagcaggcttggaagttg 54551278  T
Q  305 gtttcttctccagagtctct 324  Q
    ||||||||||||||||||||    
T  54551279 gtttcttctccagagtctct 54551298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 205 - 324
Target Start/End: Complemental strand, 26430761 - 26430642
Alignment:
Q  205 ttgggaacacctttcagttcctaaggtgtttggaggtatggattttaagggccttaagactttcaatatggctatggttgggaagcaggcttggaagttg 304  Q
    |||||| || ||||||||||| ||||| | |||||||||||   |||||||||||||| | || ||||||||||||||||| |||||| |||||||||||    
T  26430761 ttgggagcagctttcagttccaaaggtatatggaggtatgggagttaagggccttaaggcctttaatatggctatggttggtaagcagacttggaagttg 26430662  T
Q  305 gtttcttctccagagtctct 324  Q
    ||||||||||||||||||||    
T  26430661 gtttcttctccagagtctct 26430642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 272 - 328
Target Start/End: Complemental strand, 26007571 - 26007515
Alignment:
Q  272 atggctatggttgggaagcaggcttggaagttggtttcttctccagagtctctgctc 328  Q
    |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  26007571 atggctatggttggcaagcaggcttggaagttagtttcttctccagagtctctgctc 26007515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 209 - 252
Target Start/End: Complemental strand, 26007614 - 26007571
Alignment:
Q  209 gaacacctttcagttcctaaggtgtttggaggtatggattttaa 252  Q
    |||| |||||||||||||||||||||||| ||||||| ||||||    
T  26007614 gaacgcctttcagttcctaaggtgtttggcggtatgggttttaa 26007571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 160 - 204
Target Start/End: Original strand, 29508116 - 29508160
Alignment:
Q  160 atgaaggcaaaaactaaaggaaagagtggagatgttgcacttaag 204  Q
    |||||||||||||||||||||||||  || |||||||| ||||||    
T  29508116 atgaaggcaaaaactaaaggaaagaaaggtgatgttgctcttaag 29508160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 13 - 208
Target Start/End: Complemental strand, 46093076 - 46092881
Alignment:
Q  13 aatgttgtgtataaaattgtagtcaaggtgctcgcaaataggctcaaacatgtgctcgataagtgtatttctattaatcagtcatcttttgtcccatgaa 112  Q
    ||||||||||||||||| |||||||||||||| || || ||||||||||| ||||||||||| ||||| ||||||||||||||| |||||||| || |      
T  46093076 aatgttgtgtataaaatagtagtcaaggtgcttgctaacaggctcaaacaggtgctcgataaatgtatctctattaatcagtcagcttttgtctcaggtc 46092977  T
Q  113 ggtccatcttagataatacaatagtggctattgaaattgtacactatatgaaggcaaaaactaaaggaaagagtggagatgttgcacttaagttgg 208  Q
    | || |||||| | ||| |||| ||||||||||||||||| | |||||||||||| ||  | || ||||||||| ||||||||||| |||||||||    
T  46092976 gatctatcttatacaatgcaattgtggctattgaaattgttcgctatatgaaggctaaggcaaagggaaagagtagagatgttgcaattaagttgg 46092881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 215 - 324
Target Start/End: Complemental strand, 46092100 - 46091991
Alignment:
Q  215 ctttcagttcctaaggtgtttggaggtatggattttaagggccttaagactttcaatatggctatggttgggaagcaggcttggaagttggtttcttctc 314  Q
    ||||||||||| |||||||||||||||||||   |||||||||||||| |||| ||||||||||||||||| ||||| ||||||||||||||||||||||    
T  46092100 ctttcagttccaaaggtgtttggaggtatgggagttaagggccttaaggcttttaatatggctatggttggtaagcatgcttggaagttggtttcttctc 46092001  T
Q  315 cagagtctct 324  Q
     |||||||||    
T  46092000 tagagtctct 46091991  T

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Target: chr5 (Bit Score: 81; Significance: 4e-38; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 12 - 208
Target Start/End: Complemental strand, 9612063 - 9611867
Alignment:
Q  12 caatgttgtgtataaaattgtagtcaaggtgctcgcaaataggctcaaacatgtgctcgataagtgtatttctattaatcagtcatcttttgtcccatga 111  Q
    ||||||||| || |||||||||| ||| |||||  | || ||||||||||| || || | ||| ||||| ||||||||||||||| ||||||||||| |     
T  9612063 caatgttgtatacaaaattgtagccaaagtgcttcctaacaggctcaaacaggtactaggtaaatgtatctctattaatcagtcagcttttgtcccaggt 9611964  T
Q  112 aggtccatcttagataatacaatagtggctattgaaattgtacactatatgaaggcaaaaactaaaggaaagagtggagatgttgcacttaagttgg 208  Q
     | || |||||||| ||| |||| ||||||||||||||||| |||||||||||||| ||  | ||||| ||||||||||||||||||||||||||||    
T  9611963 cgatctatcttagacaatgcaatggtggctattgaaattgttcactatatgaaggctaaggcaaaaggtaagagtggagatgttgcacttaagttgg 9611867  T

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Target: chr5; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 205 - 316
Target Start/End: Complemental strand, 27454049 - 27453938
Alignment:
Q  205 ttgggaacacctttcagttcctaaggtgtttggaggtatggattttaagggccttaagactttcaatatggctatggttgggaagcaggcttggaagttg 304  Q
    |||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||  | || ||||||||||||    
T  27454049 ttgggaacgcctttcagttcctaaggtgtttggaggtatgggttttaaaggccttaagactttcaatatggctatggttggccaacatgcttggaagttg 27453950  T
Q  305 gtttcttctcca 316  Q
    |||| |||||||    
T  27453949 gttttttctcca 27453938  T

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Target: chr5; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 215 - 324
Target Start/End: Complemental strand, 9611060 - 9610951
Alignment:
Q  215 ctttcagttcctaaggtgtttggaggtatggattttaagggccttaagactttcaatatggctatggttgggaagcaggcttggaagttggtttcttctc 314  Q
    ||||||||||| ||||| | |||||||||||   |||||||||||||| | || ||||||||||||||||| ||||||||||||||||||||||||||||    
T  9611060 ctttcagttccaaaggtatatggaggtatgggagttaagggccttaaggcctttaatatggctatggttggtaagcaggcttggaagttggtttcttctc 9610961  T
Q  315 cagagtctct 324  Q
    ||||||||||    
T  9610960 cagagtctct 9610951  T

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Target: chr5; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 35 - 178
Target Start/End: Complemental strand, 27454986 - 27454843
Alignment:
Q  35 tcaaggtgctcgcaaataggctcaaacatgtgctcgataagtgtatttctattaatcagtcatcttttgtcccatgaaggtccatcttagataatacaat 134  Q
    |||||||||| || |||||||| |||||  |||||||||| || |||| ||||||||||||| ||||||||||| |  | ||||| ||||| |||   ||    
T  27454986 tcaaggtgcttgctaataggcttaaacaactgctcgataaatgcatttttattaatcagtcaacttttgtcccaggtcgatccattttagacaatgtcat 27454887  T
Q  135 agtggctattgaaattgtacactatatgaaggcaaaaactaaag 178  Q
     | |  |||||||||||| ||||||||||| |||||| ||||||    
T  27454886 ggcgattattgaaattgttcactatatgaaagcaaaagctaaag 27454843  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 179
Target Start/End: Complemental strand, 14493080 - 14492914
Alignment:
Q  13 aatgttgtgtataaaattgtagtcaaggtgctcgcaaataggctcaaacatgtgctcgataagtgtatttctattaatcagtcatcttttgtcccatgaa 112  Q
    |||||||||||||| ||||||| ||||||||| || ||||| || ||  | ||| | |||| |||||| ||||||||  ||||| ||||  ||||| | |    
T  14493080 aatgttgtgtataagattgtagccaaggtgcttgcgaatagacttaagtaggtgttggataggtgtatatctattaactagtcagctttcttcccaggta 14492981  T
Q  113 ggtccatcttagataatacaatagtggctattgaaattgtacactatatgaaggcaaaaactaaagg 179  Q
    |  ||||  | || ||| |||| ||||| ||||| ||| | ||||| |||||||||||| |||||||    
T  14492980 gacccattcttgacaatgcaatggtggcaattgagatttttcactacatgaaggcaaaacctaaagg 14492914  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 147
Target Start/End: Complemental strand, 27054761 - 27054684
Alignment:
Q  70 gataagtgtatttctattaatcagtcatcttttgtcccatgaaggtccatcttagataatacaatagtggctattgaa 147  Q
    ||||| ||||||||||  ||||||||  ||||||| ||  ||||||| |||||||||||| |||| || |||||||||    
T  27054761 gataaatgtatttctaaaaatcagtctgcttttgttcctggaaggtctatcttagataatgcaatggtagctattgaa 27054684  T

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Target: scaffold0016 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 215 - 324
Target Start/End: Original strand, 185721 - 185830
Alignment:
Q  215 ctttcagttcctaaggtgtttggaggtatggattttaagggccttaagactttcaatatggctatggttgggaagcaggcttggaagttggtttcttctc 314  Q
    ||||||||||| ||||| |||||||||||||   |||||||||||||| | || ||||||||||||||||| ||||||||||||||||||||||||||||    
T  185721 ctttcagttccaaaggtatttggaggtatgggagttaagggccttaaggcctttaatatggctatggttggtaagcaggcttggaagttggtttcttctc 185820  T
Q  315 cagagtctct 324  Q
    ||||||||||    
T  185821 cagagtctct 185830  T

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Target: scaffold0577 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: scaffold0577
Description:

Target: scaffold0577; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 110 - 208
Target Start/End: Complemental strand, 4652 - 4554
Alignment:
Q  110 gaaggtccatcttagataatacaatagtggctattgaaattgtacactatatgaaggcaaaaactaaaggaaagagtggagatgttgcacttaagttgg 208  Q
    |||||| ||||||||||||| |||| ||||||||| ||||| |||||||||||||||||||  ||||||||||||||||||||||| ||||||||||||    
T  4652 gaaggttcatcttagataatgcaatggtggctatttaaattatacactatatgaaggcaaaggctaaaggaaagagtggagatgttacacttaagttgg 4554  T

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Target: scaffold0577; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 215 - 324
Target Start/End: Complemental strand, 3757 - 3648
Alignment:
Q  215 ctttcagttcctaaggtgtttggaggtatggattttaagggccttaagactttcaatatggctatggttgggaagcaggcttggaagttggtttcttctc 314  Q
    ||||||||||| |||||||||||||||||||   |||||||||||||| |||| ||||||||| ||||| |  |||||||||||||||||||||||||||    
T  3757 ctttcagttccaaaggtgtttggaggtatggtagttaagggccttaaggcttttaatatggctttggttagttagcaggcttggaagttggtttcttctc 3658  T
Q  315 cagagtctct 324  Q
     |||||||||    
T  3657 tagagtctct 3648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0607 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0607
Description:

Target: scaffold0607; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 249 - 324
Target Start/End: Original strand, 4286 - 4361
Alignment:
Q  249 ttaagggccttaagactttcaatatggctatggttgggaagcaggcttggaagttggtttcttctccagagtctct 324  Q
    |||||||||||||| |||| ||||||| ||||||||| ||| || ||||||||||||||||||||| |||||||||    
T  4286 ttaagggccttaaggcttttaatatggatatggttggtaagaagacttggaagttggtttcttctctagagtctct 4361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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