View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2585_high_58 (Length: 209)

Name: NF2585_high_58
Description: NF2585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2585_high_58
NF2585_high_58
[»] chr4 (6 HSPs)
chr4 (20-167)||(1173461-1173607)
chr4 (53-101)||(32397404-32397452)
chr4 (53-101)||(32882220-32882268)
chr4 (58-99)||(38052427-38052468)
chr4 (54-90)||(9012484-9012520)
chr4 (53-101)||(19806961-19807009)
[»] chr1 (4 HSPs)
chr1 (53-102)||(29086588-29086637)
chr1 (53-99)||(31023726-31023772)
chr1 (58-95)||(11030142-11030179)
chr1 (62-99)||(13352559-13352596)
[»] chr2 (3 HSPs)
chr2 (55-102)||(43248522-43248569)
chr2 (53-99)||(10197955-10198001)
chr2 (53-99)||(21134543-21134589)
[»] chr7 (3 HSPs)
chr7 (53-99)||(42521430-42521476)
chr7 (58-99)||(30440532-30440573)
chr7 (67-99)||(24166749-24166781)
[»] chr5 (5 HSPs)
chr5 (53-99)||(8050487-8050533)
chr5 (53-99)||(36302831-36302877)
chr5 (53-101)||(6517544-6517592)
chr5 (66-102)||(9227857-9227893)
chr5 (53-101)||(37337124-37337172)
[»] chr8 (4 HSPs)
chr8 (62-99)||(3598778-3598815)
chr8 (67-99)||(1513460-1513492)
chr8 (53-101)||(24524035-24524083)
chr8 (53-101)||(36652533-36652581)
[»] chr6 (1 HSPs)
chr6 (54-102)||(25149447-25149493)


Alignment Details
Target: chr4 (Bit Score: 88; Significance: 2e-42; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 20 - 167
Target Start/End: Complemental strand, 1173607 - 1173461
Alignment:
Q  20 tacaatacctatacatcattaatannnnnnnnactatcataccctttactatttattattctatcttctttcaattcttttaagaaaaatgctatataca 119  Q
    ||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||    
T  1173607 tacaatacctatacatcattaatattttttttactatcataccctttactatttattattctatcttcttttaatt-ttttaagaaaaatactatataca 1173509  T
Q  120 acgaattgattctcgcaggtacatactgaaagagtattccactgggca 167  Q
    || |||||||||| ||  |||||||| |||||||||||||||||||||    
T  1173508 acaaattgattcttgcgagtacataccgaaagagtattccactgggca 1173461  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 101
Target Start/End: Complemental strand, 32397452 - 32397404
Alignment:
Q  53 ctatcataccctttactatttattattctatcttctttcaattctttta 101  Q
    |||| ||| |||| ||||||||||| |||||||||||||||||||||||    
T  32397452 ctattataaccttaactatttattactctatcttctttcaattctttta 32397404  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 101
Target Start/End: Original strand, 32882220 - 32882268
Alignment:
Q  53 ctatcataccctttactatttattattctatcttctttcaattctttta 101  Q
    |||| ||| |||| ||||||||||| |||||||||||||||||||||||    
T  32882220 ctattataaccttaactatttattactctatcttctttcaattctttta 32882268  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 58 - 99
Target Start/End: Complemental strand, 38052468 - 38052427
Alignment:
Q  58 ataccctttactatttattattctatcttctttcaattcttt 99  Q
    |||||||| | ||||||||||| |||||||||||||||||||    
T  38052468 atacccttaattatttattattttatcttctttcaattcttt 38052427  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 90
Target Start/End: Original strand, 9012484 - 9012520
Alignment:
Q  54 tatcataccctttactatttattattctatcttcttt 90  Q
    |||||| | ||||||||||||||||||||||||||||    
T  9012484 tatcattctctttactatttattattctatcttcttt 9012520  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 101
Target Start/End: Complemental strand, 19807009 - 19806961
Alignment:
Q  53 ctatcataccctttactatttattattctatcttctttcaattctttta 101  Q
    |||| ||| |||| ||||||||||| ||||||||||||||||| |||||    
T  19807009 ctattataaccttaactatttattactctatcttctttcaattatttta 19806961  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 53 - 102
Target Start/End: Complemental strand, 29086637 - 29086588
Alignment:
Q  53 ctatcataccctttactatttattattctatcttctttcaattcttttaa 102  Q
    |||||||||||||||||||||||| |||| ||||||||||||||||||||    
T  29086637 ctatcataccctttactatttattgttctctcttctttcaattcttttaa 29086588  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 99
Target Start/End: Complemental strand, 31023772 - 31023726
Alignment:
Q  53 ctatcataccctttactatttattattctatcttctttcaattcttt 99  Q
    |||| |||||||| ||||||||||||||| |||||||||| ||||||    
T  31023772 ctattatacccttaactatttattattctctcttctttcatttcttt 31023726  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 58 - 95
Target Start/End: Original strand, 11030142 - 11030179
Alignment:
Q  58 ataccctttactatttattattctatcttctttcaatt 95  Q
    |||||||| ||||||||||||||| |||||||||||||    
T  11030142 atacccttgactatttattattctctcttctttcaatt 11030179  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 62 - 99
Target Start/End: Original strand, 13352559 - 13352596
Alignment:
Q  62 cctttactatttattattctatcttctttcaattcttt 99  Q
    |||| ||||||||||| |||||||||||||||||||||    
T  13352559 ccttaactatttattactctatcttctttcaattcttt 13352596  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 55 - 102
Target Start/End: Complemental strand, 43248569 - 43248522
Alignment:
Q  55 atcataccctttactatttattattctatcttctttcaattcttttaa 102  Q
    |||||||||||||||||| |||||| | | ||||||||||||||||||    
T  43248569 atcataccctttactattaattattttcttttctttcaattcttttaa 43248522  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 99
Target Start/End: Complemental strand, 10198001 - 10197955
Alignment:
Q  53 ctatcataccctttactatttattattctatcttctttcaattcttt 99  Q
    |||| |||||||| ||||||||||| | |||||||||||||||||||    
T  10198001 ctattatacccttgactatttattactttatcttctttcaattcttt 10197955  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 99
Target Start/End: Complemental strand, 21134589 - 21134543
Alignment:
Q  53 ctatcataccctttactatttattattctatcttctttcaattcttt 99  Q
    |||| ||| |||| ||||||||||||||| |||||||||||||||||    
T  21134589 ctattataaccttaactatttattattctctcttctttcaattcttt 21134543  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 99
Target Start/End: Original strand, 42521430 - 42521476
Alignment:
Q  53 ctatcataccctttactatttattattctatcttctttcaattcttt 99  Q
    |||| |||||||| ||||||||||| ||| |||||||||||||||||    
T  42521430 ctataatacccttaactatttattactctttcttctttcaattcttt 42521476  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 58 - 99
Target Start/End: Complemental strand, 30440573 - 30440532
Alignment:
Q  58 ataccctttactatttattattctatcttctttcaattcttt 99  Q
    ||||| || ||||||||||||||| |||||||||||||||||    
T  30440573 ataccattaactatttattattctctcttctttcaattcttt 30440532  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 99
Target Start/End: Complemental strand, 24166781 - 24166749
Alignment:
Q  67 actatttattattctatcttctttcaattcttt 99  Q
    ||||||||||||||| |||||||||||||||||    
T  24166781 actatttattattctctcttctttcaattcttt 24166749  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 99
Target Start/End: Original strand, 8050487 - 8050533
Alignment:
Q  53 ctatcataccctttactatttattattctatcttctttcaattcttt 99  Q
    |||| ||| |||| ||||||||||| |||||||||||||||||||||    
T  8050487 ctattataaccttgactatttattactctatcttctttcaattcttt 8050533  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 99
Target Start/End: Complemental strand, 36302877 - 36302831
Alignment:
Q  53 ctatcataccctttactatttattattctatcttctttcaattcttt 99  Q
    |||| ||| |||| ||||||||||| |||||||||||||||||||||    
T  36302877 ctattataaccttaactatttattactctatcttctttcaattcttt 36302831  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 101
Target Start/End: Complemental strand, 6517592 - 6517544
Alignment:
Q  53 ctatcataccctttactatttattattctatcttctttcaattctttta 101  Q
    |||| ||| |||| ||||||||||| ||| |||||||||||||||||||    
T  6517592 ctattatatccttaactatttattactctttcttctttcaattctttta 6517544  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 102
Target Start/End: Complemental strand, 9227893 - 9227857
Alignment:
Q  66 tactatttattattctatcttctttcaattcttttaa 102  Q
    |||||||||||||| |||||| |||||||||||||||    
T  9227893 tactatttattattttatcttttttcaattcttttaa 9227857  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 101
Target Start/End: Original strand, 37337124 - 37337172
Alignment:
Q  53 ctatcataccctttactatttattattctatcttctttcaattctttta 101  Q
    |||| ||| |||| ||||||||||| ||||||||||||||| |||||||    
T  37337124 ctattataaccttaactatttattactctatcttctttcaagtctttta 37337172  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 62 - 99
Target Start/End: Complemental strand, 3598815 - 3598778
Alignment:
Q  62 cctttactatttattattctatcttctttcaattcttt 99  Q
    |||| ||||||||||| |||||||||||||||||||||    
T  3598815 ccttaactatttattactctatcttctttcaattcttt 3598778  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 99
Target Start/End: Complemental strand, 1513492 - 1513460
Alignment:
Q  67 actatttattattctatcttctttcaattcttt 99  Q
    ||||||||||| |||||||||||||||||||||    
T  1513492 actatttattactctatcttctttcaattcttt 1513460  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 101
Target Start/End: Original strand, 24524035 - 24524083
Alignment:
Q  53 ctatcataccctttactatttattattctatcttctttcaattctttta 101  Q
    |||| ||| |||| ||||||||||| | |||||||||||||||||||||    
T  24524035 ctattataaccttaactatttattactttatcttctttcaattctttta 24524083  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 101
Target Start/End: Original strand, 36652533 - 36652581
Alignment:
Q  53 ctatcataccctttactatttattattctatcttctttcaattctttta 101  Q
    |||| ||| |||| ||||||||||| ||| |||||||||||||||||||    
T  36652533 ctattatatccttaactatttattactctttcttctttcaattctttta 36652581  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 54 - 102
Target Start/End: Complemental strand, 25149493 - 25149447
Alignment:
Q  54 tatcataccctttactatttattattctatcttctttcaattcttttaa 102  Q
    |||||||||||||| ||||||||| |||  |||||||||||||||||||    
T  25149493 tatcataccctttattatttattactct--cttctttcaattcttttaa 25149447  T

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