View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2585_high_7 (Length: 572)
Name: NF2585_high_7
Description: NF2585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2585_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 104 - 556
Target Start/End: Complemental strand, 53091219 - 53090762
Alignment:
| Q |
104 |
tctcactaatcaagaacaaaggtaggataggttgcttgataacttggcaaccatgcagtagtccatattcaatcttgggagcaaaggaataacagattct |
203 |
Q |
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| T |
53091219 |
tctcactaatcaagaacaaaggtaggataggttgcttgataacttggcaaccatgcagtggtgtatattcaatcttgggagcaaaggaataacagattct |
53091120 |
T |
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| Q |
204 |
atacattgagttagcttctctctttggaaatgctagcttctctaagacaacaagtcctatagtataagttgggtatgggtgaagggtcctcttcaattct |
303 |
Q |
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| T |
53091119 |
atacattgagttagcttctctctttggaaatgctagcttctctaagacaacaagtcctatagtataagttgggtatgggtgaagggtcctcttcaattct |
53091020 |
T |
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| Q |
304 |
gttaaatataaaacaaagtttaggcaaattaagttaggtccaacataa-----cataggaacaatatccaagaccaatagcatatccacccaccgctttg |
398 |
Q |
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| T |
53091019 |
gttaaatataaaacaaagtttaggcaaattaggttaggtccaacataacataacataggaacaatatccaagaccaatagcatatccacccaccgctttg |
53090920 |
T |
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| Q |
399 |
gttctctttctgagatagtataacagaattgttctagtaaagtggacgcgaagaaacgaagcttccaatcttcataccatatattatgccaattgtctcc |
498 |
Q |
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| T |
53090919 |
gctctctttctgagatagtataacagaattgttctagtgaagtggacgcgaagaaacgaagcttccaatcttcataccatatattatgccaattgtctcc |
53090820 |
T |
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| Q |
499 |
tttaatattgtccatttctactacacattactaactactacttataactaacctaatt |
556 |
Q |
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| T |
53090819 |
tttaatattgtccatttctactacacattactaactactacttataaccaacctaatt |
53090762 |
T |
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