View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2585_high_8 (Length: 567)
Name: NF2585_high_8
Description: NF2585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2585_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 444; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 13 - 550
Target Start/End: Original strand, 766319 - 766857
Alignment:
| Q |
13 |
atgaaaacggtgagttaattttcttatttccattcataaatctataaccaagtacaatgttccatttttattgtactagtttgtaacaatctaggtagta |
112 |
Q |
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| T |
766319 |
atgaaaacggtgagttaattttcttatttccattcataaatctataaccaagtacaatgttccatttttattctacttgtttgtaacaatctaggtagta |
766418 |
T |
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| Q |
113 |
tctaaattctagattgaagatgtgttgggtgtctttca--------acacgatgatatgattgcattcaatcgattattttatttcaaaaattagtattc |
204 |
Q |
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| T |
766419 |
tctaaattttagattgaagatgtgttgggtgtctttcacgaaacacacacgaagatatgattgcattcaatcgattattttattttaaaaattagtattc |
766518 |
T |
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| Q |
205 |
atgtgtatgtgttagtgttagtggtccgtgtcaattttttgtgcttcatatatagaatttggattatctgcgatggacaatctcacacaatcatttattt |
304 |
Q |
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| T |
766519 |
atgtgtatgtgt------tagtggtccgtgtcaattttttgtgcttcatatatagaatttggattatctgcgatggacaatctcacacaatcatttattt |
766612 |
T |
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| Q |
305 |
gttattttggtggccattagatcgagatcaaatagtttagatttcaaactcgacttttggatttaaaagaaaaat-aaaatcatgtaatgaaatctgaat |
403 |
Q |
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| T |
766613 |
gttattttggtggccattagatcaagatcaaatagtttagatttcaaactcgacttttggatttaaaagaaaaatcaaaatcatataatgaaatctgaat |
766712 |
T |
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| Q |
404 |
tgtttgatcttgatctagcagggatcagttgtgagtgtaggcaatccaaatccttcctatataacaatgctactacaaaattactactacacataaatct |
503 |
Q |
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| T |
766713 |
tgtttgatcttgatctagcagggatcacttgtgagtgtaggcaatccaaatccttcctatataacaatgctactacaaaattactactacacataaatct |
766812 |
T |
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| Q |
504 |
ttattctaaaaaacaattaaggaggttttctgattattgtatgtgtt |
550 |
Q |
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| T |
766813 |
ttattctaaaaaacaattaaggaggttt--tgattattgtatgtgtt |
766857 |
T |
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