View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2585_low_11 (Length: 535)
Name: NF2585_low_11
Description: NF2585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2585_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 371; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 14 - 400
Target Start/End: Original strand, 47330300 - 47330686
Alignment:
| Q |
14 |
aatatggatatgattttgtctatgtatcactagaaataatattgctatagtttttaggatgtaagtggcaataattaaatttgtatcagctggttaaaaa |
113 |
Q |
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| T |
47330300 |
aatatggatatgattttgtctatgtatcactagaaataatattgctatagtttttaggatgtaagtggcaataattaaatttgtatcggctggttaaaaa |
47330399 |
T |
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| Q |
114 |
ggaagtcaacaatttgctgcttcaaaacttaatttggcacaagcaagacatgctgaatgtgaaacacagcacatcatgattataacttataagtcatctt |
213 |
Q |
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| T |
47330400 |
ggaagtcaacaatttgctgcttcaaaacttaatttggcacaagcaagacatgctgaatgtgaaacacagcacatcatgattataacttataagtcatctt |
47330499 |
T |
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| Q |
214 |
taaataatactatgttagacttagagaaaaataacactatgaattaaaacgggttccgacgtgctttgctctccttaatttgtaataatgtcaatcatgc |
313 |
Q |
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| T |
47330500 |
taaataatactatgttggacttagagaaaaataacactatgaattaaaacaggttccgacgtgctttgctctccttaatttgtaataatgtcaatcatgc |
47330599 |
T |
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| Q |
314 |
aaaatctaacgatttagataggaattcaatactactatttaaatagagaaatgtatcttgagatggttcatttaatcaatgaattgg |
400 |
Q |
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| T |
47330600 |
aaaatctaacgatttagataggaattcaatactactatttaaatagagaaatgtatcttgtgatggttcatttaatcaatgaattgg |
47330686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 450 - 519
Target Start/End: Original strand, 47330736 - 47330805
Alignment:
| Q |
450 |
tgtgaaaagttcattatcattcaataaaattttacatactacgaatctgtacgattaaagagattgttag |
519 |
Q |
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| T |
47330736 |
tgtgaaaagttcattatcattcaataaaattttacatactacgaatctgtacgattaaagagattgttag |
47330805 |
T |
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