View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2585_low_13 (Length: 519)

Name: NF2585_low_13
Description: NF2585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2585_low_13
NF2585_low_13
[»] chr5 (15 HSPs)
chr5 (250-502)||(11049719-11049978)
chr5 (121-502)||(10609813-10610194)
chr5 (133-501)||(10742439-10742807)
chr5 (122-502)||(10563130-10563510)
chr5 (56-203)||(11049560-11049722)
chr5 (120-209)||(10218450-10218539)
chr5 (122-502)||(10748741-10749121)
chr5 (179-500)||(10718681-10719002)
chr5 (174-301)||(10764875-10765002)
chr5 (16-81)||(10218354-10218419)
chr5 (386-502)||(10765105-10765221)
chr5 (412-502)||(10548896-10548986)
chr5 (250-303)||(10549095-10549148)
chr5 (264-301)||(10557224-10557261)
chr5 (245-294)||(10594069-10594118)
[»] chr6 (5 HSPs)
chr6 (175-498)||(12897672-12897995)
chr6 (122-426)||(12956257-12956561)
chr6 (175-498)||(12905293-12905617)
chr6 (122-360)||(12946886-12947124)
chr6 (122-282)||(12930599-12930759)
[»] chr2 (1 HSPs)
chr2 (175-498)||(17925185-17925508)
[»] chr3 (1 HSPs)
chr3 (56-105)||(31468804-31468853)


Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-119; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 250 - 502
Target Start/End: Original strand, 11049719 - 11049978
Alignment:
Q  250 caagcttttgaggtgacatatttcttgtggaatatctccttct-------aagttgttatacacaaatgaaaaatcggttaagcttgaaagattccctat 342  Q
    |||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11049719 caagcttttgaggtgacatatttcttgtggaatatctccttctaagttctaagttgttatacacaaatgaaaaatcggttaagcttgaaagattccctat 11049818  T
Q  343 gaatgaagggattcctccagttaatttatttttccaaatggccaatgattgaagttttttcaaagagctaatttcatttggtatcttgccaattaaattg 442  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  11049819 gaatgaagggattcctccagttaatttatttttccaaatggccaatgattgaagttttttcaaagagccaatttcatttggtatcttgccaattaaattg 11049918  T
Q  443 ttccctcccaaatctaagtctttaagattggagcaatatgtgaggtttgtaggaatttct 502  Q
    |||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||    
T  11049919 ttccctcccaaatacaagtctttaagattggagcaatgtgtgaggtttgtaggaatttct 11049978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 158; E-Value: 8e-84
Query Start/End: Original strand, 121 - 502
Target Start/End: Complemental strand, 10610194 - 10609813
Alignment:
Q  121 aaacatgttgggtggaagagagccataaaagttattcattgttagtgtgagctcaataagtgatgagatattgtaaaaacaagaaggaatcataccagac 220  Q
    |||||||||||||||||| ||||||| |||  ||||||| ||||||| ||| ||| |||||| |||||||||||||| ||||||||||||||||||||||    
T  10610194 aaacatgttgggtggaagtgagccattaaatctattcatggttagtgagagttcagtaagtgctgagatattgtaaagacaagaaggaatcataccagac 10610095  T
Q  221 aaattgttcacaccccaatttaaaattgtcaagcttttgaggtgacatatttcttgtggaatatctccttctaagttgttatacacaaatgaaaaatcgg 320  Q
    |||| ||| ||||||  |  ||||  | ||||  |||||||  ||||| |||||||||||||||| ||||||||||||||  |   || |||||||   |    
T  10610094 aaatagtttacacccataaataaacctctcaaatttttgagacgacatgtttcttgtggaatatccccttctaagttgtttgaagtaactgaaaaacgcg 10609995  T
Q  321 ttaagcttgaaagattccctatgaatgaagggattcctccagttaatttatttttccaaatggccaatgattgaagttttttcaaagagctaatttcatt 420  Q
    |||||| |||||||||||||| ||||||||| |||||||| |||||||| ||||||||||||| ||   ||||||| ||||||||||||| ||||||| |    
T  10609994 ttaagcatgaaagattccctacgaatgaaggaattcctccggttaatttgtttttccaaatggtcacatattgaagctttttcaaagagccaatttcaat 10609895  T
Q  421 tggtatcttgccaattaaattgttccctcccaaatctaagtctttaagattggagcaatatgtgaggtttgtaggaatttct 502  Q
     ||||| |||||||| |||||||| |||||||||  ||| ||||| ||||||||||||| ||| ||||||||||||||||||    
T  10609894 cggtattttgccaatcaaattgtttcctcccaaacgtaactctttgagattggagcaatgtgtcaggtttgtaggaatttct 10609813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 133 - 501
Target Start/End: Original strand, 10742439 - 10742807
Alignment:
Q  133 tggaagagagccataaaagttattcattgttagtgtgagctcaataagtgatgagatattgtaaaaacaagaaggaatcataccagacaaattgttcaca 232  Q
    ||||||||||||||  |||||||||||   |||||  |||||| | ||| |||| |||||||||| ||||||||||| |||||||||||||| ||| |||    
T  10742439 tggaagagagccattgaagttattcatgactagtgaaagctcagtcagtaatgacatattgtaaatacaagaaggaaccataccagacaaatagtttaca 10742538  T
Q  233 ccccaatttaaaattgtcaagcttttgaggtgacatatttcttgtggaatatctccttctaagttgttatacacaaatgaaaaatcggttaagcttgaaa 332  Q
    |||  || ||||  | ||||  |||| ||  |||||||||||||||||||||| ||||||||||||||  |   ||  ||||||    |||| |||||||    
T  10742539 cccatatataaacctctcaaattttttagacgacatatttcttgtggaatatccccttctaagttgtttgaaggaaccgaaaaaagcattaaacttgaaa 10742638  T
Q  333 gattccctatgaatgaagggattcctccagttaatttatttttccaaatggccaatgattgaagttttttcaaagagctaatttcatttggtatcttgcc 432  Q
    ||||||||||| |||||| ||||||||||||||| || || |||||||    |||||||||||||||||||||| ||| ||||||| ||||||| |||||    
T  10742639 gattccctatggatgaagagattcctccagttaaattgttattccaaacactcaatgattgaagttttttcaaatagccaatttcaattggtattttgcc 10742738  T
Q  433 aattaaattgttccctcccaaatctaagtctttaagattggagcaatatgtgaggtttgtaggaatttc 501  Q
    ||| || ||||||||| |||||  || | |||| ||||| ||||||||||| | |||||||||||||||    
T  10742739 aatcaacttgttccctgccaaagttatgactttcagatttgagcaatatgtcaagtttgtaggaatttc 10742807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 122 - 502
Target Start/End: Complemental strand, 10563510 - 10563130
Alignment:
Q  122 aacatgttgggtggaagagagccataaaagttattcattgttagtgtgagctcaataagtgatgagatattgtaaaaacaagaaggaatcataccagaca 221  Q
    |||||||||| ||||||| |||||  ||||||||||||   ||||| ||||||||| |||||||| |||||||||| ||||| |||||||||||||||||    
T  10563510 aacatgttggatggaagatagccagtaaagttattcatgactagtgagagctcaattagtgatgacatattgtaaatacaaggaggaatcataccagaca 10563411  T
Q  222 aattgttcacaccccaatttaaaattgtcaagcttttgaggtgacatatttcttgtggaatatctccttctaagttgttatacacaaatgaaaaatcggt 321  Q
    | |||||| ||||| |   ||||| ||||||| |||||||| | |||| |||  |||||||||||||| |||| |||||| |  || | | ||||         
T  10563410 atttgttctcacccaacaataaaagtgtcaagtttttgaggcggcatacttcacgtggaatatctcctcctaatttgttagaagcacacgtaaaacgcac 10563311  T
Q  322 taagcttgaaagattccctatgaatgaagggattcctccagttaatttatttttccaaatggccaatgattgaagttttttcaaagagctaatttcattt 421  Q
    ||||  |||||| ||||||||| |||||||||| ||||||||||| || ||     ||| |   ||||| ||||| ||||||||||||| ||||||| ||    
T  10563310 taaggatgaaaggttccctatggatgaagggatccctccagttaaattgttaccaaaaaggtggaatgaatgaagctttttcaaagagccaatttcaatt 10563211  T
Q  422 ggtatcttgccaattaaattgttccctcccaaatctaagtctttaagattggagcaatatgtgaggtttgtaggaatttct 502  Q
    ||||| || ||||| || |||||||||||||||   |||||| | ||||||||||||||||| | ||||||||||||||||    
T  10563210 ggtattttcccaatcaatttgttccctcccaaaatcaagtctatgagattggagcaatatgtcaagtttgtaggaatttct 10563130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 56 - 203
Target Start/End: Original strand, 11049560 - 11049722
Alignment:
Q  56 gcatttgttttggaagtggggattggacctgagaattgatttcccccaatcgcacaaaattggaga---------------aacatgttgggtggaagag 140  Q
    ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||               |||||||||||||||||||    
T  11049560 gcatttgttatggaagtggggattggtcctgagaattgatttcccccaatcgcacaaaattggagattggggaaggcatgaaacatgttgggtggaagag 11049659  T
Q  141 agccataaaagttattcattgttagtgtgagctcaataagtgatgagatattgtaaaaacaag 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11049660 agccataaaagttattcattgttagtgtgagctcaataagtgatgagatattgtaaaaacaag 11049722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 120 - 209
Target Start/End: Original strand, 10218450 - 10218539
Alignment:
Q  120 gaaacatgttgggtggaagagagccataaaagttattcattgttagtgtgagctcaataagtgatgagatattgtaaaaacaagaaggaa 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10218450 gaaacatgttgggtggaagagagccataaaagttattcattgttagtgtgagctcaataagtgatgagatattgtaaaaacaagaaggaa 10218539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 122 - 502
Target Start/End: Original strand, 10748741 - 10749121
Alignment:
Q  122 aacatgttgggtggaagagagccataaaagttattcattgttagtgtgagctcaataagtgatgagatattgtaaaaacaagaaggaatcataccagaca 221  Q
    |||| ||||| |||||||||||||  ||| |||||    ||||||| ||| | | | |||||||||||||| |||| ||||||||||| |||||||||||    
T  10748741 aacaagttggatggaagagagccaataaatttattttcggttagtgagagttgagttagtgatgagatattataaagacaagaaggaaacataccagaca 10748840  T
Q  222 aattgttcacaccccaatttaaaattgtcaagcttttgaggtgacatatttcttgtggaatatctccttctaagttgttatacacaaatgaaaaatcggt 321  Q
    |||||||| |||||  || |||  || | | | ||||||| | |||||||||||||||||| ||||| | ||||||||||||   ||  | ||   |  |    
T  10748841 aattgttctcacccacatgtaaccttctaatgtttttgagattacatatttcttgtggaatctctccctttaagttgttatatgtaaccgcaatccctat 10748940  T
Q  322 taagcttgaaagattccctatgaatgaagggattcctccagttaatttatttttccaaatggccaatgattgaagttttttcaaagagctaatttcattt 421  Q
    ||||  |||||||||||||||||||||||| | ||| |||||||| || |||  |||||     | |  |||||| ||||||||||||| ||||||| ||    
T  10748941 taaggatgaaagattccctatgaatgaaggaaatccaccagttaaattgtttccccaaacatttattagttgaagctttttcaaagagccaatttcaatt 10749040  T
Q  422 ggtatcttgccaattaaattgttccctcccaaatctaagtctttaagattggagcaatatgtgaggtttgtaggaatttct 502  Q
    ||||| |||||||| | |||||||||||||| || |||| |||| ||||||||||||||||| | ||||| ||||||||||    
T  10749041 ggtattttgccaatcacattgttccctcccacatttaagcctttgagattggagcaatatgtcaagtttgaaggaatttct 10749121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 179 - 500
Target Start/End: Original strand, 10718681 - 10719002
Alignment:
Q  179 agtgatgagatattgtaaaaacaagaaggaatcataccagacaaattgttcacaccccaatttaaaattgtcaagcttttgaggtgacatatttcttgtg 278  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||   | |   || ||||||||||||| |||||||  ||||||||||| |||    
T  10718681 agtgatgagatattgtaaaaacaagaaggaattataccagacaaattgttaggatctgcatataaaattgtcaagtttttgagacgacatatttctggtg 10718780  T
Q  279 gaatatctccttctaagttgttatacacaaatgaaaaatcggttaagcttgaaagattccctatgaatgaagggattcctccagttaatttatttttcca 378  Q
    ||||| |||| ||||||||||||||   ||  ||||   |   ||| | ||||||||| || |||||||||||||||||||||||||| || ||||| |     
T  10718781 gaataactccgtctaagttgttataaggaaccgaaagtccccataaacatgaaagatttcccatgaatgaagggattcctccagttaaattgttttttcc 10718880  T
Q  379 aatggccaatgattgaagttttttcaaagagctaatttcatttggtatcttgccaattaaattgttccctcccaaatctaagtctttaagattggagcaa 478  Q
    ||||||||    ||||||  |||||||||||| || |||   |||||  |||||||| |  || ||||||  |||   ||| ||||| ||||||||||||    
T  10718881 aatggccagaatttgaagccttttcaaagagccaacttctactggtaatttgccaatgagcttattcccttgcaaggataactctttgagattggagcaa 10718980  T
Q  479 tatgtgaggtttgtaggaattt 500  Q
    || || ||||||||||||||||    
T  10718981 tacgtcaggtttgtaggaattt 10719002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 174 - 301
Target Start/End: Original strand, 10764875 - 10765002
Alignment:
Q  174 caataagtgatgagatattgtaaaaacaagaaggaatcataccagacaaattgttcacaccccaatttaaaattgtcaagcttttgaggtgacatatttc 273  Q
    ||||||||||||||||||| |||| |||||| |||||| ||||||||||||||||| | ||  ||  ||||| ||||||| |||||||| ||||||||||    
T  10764875 caataagtgatgagatattataaagacaagatggaatcttaccagacaaattgttctcgccaaaagataaaaatgtcaagtttttgaggcgacatatttc 10764974  T
Q  274 ttgtggaatatctccttctaagttgtta 301  Q
    |||||||||||||||| |||| ||||||    
T  10764975 ttgtggaatatctcctcctaatttgtta 10765002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 10218354 - 10218419
Alignment:
Q  16 atagttttgaccgagatcaaatattgtaatgggagatgatgcatttgttttggaagtggggattgg 81  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  10218354 atagttttgaccgagatcaaatattgtaatgggagatgatgcatttgttatggaagtggggattgg 10218419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 386 - 502
Target Start/End: Original strand, 10765105 - 10765221
Alignment:
Q  386 aatgattgaagttttttcaaagagctaatttcatttggtatcttgccaattaaattgttccctcccaaatctaagtctttaagattggagcaatatgtga 485  Q
    ||||| ||||| ||||||||||||| ||||||| || |||| || ||  | || |||||||||||||||   |||||| | |||||||||||||| || |    
T  10765105 aatgaatgaaggtttttcaaagagccaatttcaattagtattttccctgtcaatttgttccctcccaaaatcaagtctatgagattggagcaatacgtca 10765204  T
Q  486 ggtttgtaggaatttct 502  Q
     |||| |||||||||||    
T  10765205 agtttataggaatttct 10765221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 412 - 502
Target Start/End: Complemental strand, 10548986 - 10548896
Alignment:
Q  412 aatttcatttggtatcttgccaattaaattgttccctcccaaatctaagtctttaagattggagcaatatgtgaggtttgtaggaatttct 502  Q
    ||||||| ||||||| || ||||| ||||||||||||| |||   ||||| |||||| ||| | |||| ||| | ||||||||||||||||    
T  10548986 aatttcaattggtatttttccaatcaaattgttccctctcaaggataagtatttaaggttgaaacaatttgtcaagtttgtaggaatttct 10548896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 303
Target Start/End: Complemental strand, 10549148 - 10549095
Alignment:
Q  250 caagcttttgaggtgacatatttcttgtggaatatctccttctaagttgttata 303  Q
    |||| |||||||  ||||||||||||||||||||||||| || || ||||||||    
T  10549148 caagtttttgagacgacatatttcttgtggaatatctccctccaaattgttata 10549095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 264 - 301
Target Start/End: Complemental strand, 10557261 - 10557224
Alignment:
Q  264 gacatatttcttgtggaatatctccttctaagttgtta 301  Q
    ||||||||||||| ||||||||||| ||||||||||||    
T  10557261 gacatatttcttggggaatatctccctctaagttgtta 10557224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 294
Target Start/End: Complemental strand, 10594118 - 10594069
Alignment:
Q  245 attgtcaagcttttgaggtgacatatttcttgtggaatatctccttctaa 294  Q
    ||||||||| |||| || ||||||||||||||||||||||| || |||||    
T  10594118 attgtcaagtttttaagatgacatatttcttgtggaatatcaccctctaa 10594069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 77; Significance: 2e-35; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 175 - 498
Target Start/End: Complemental strand, 12897995 - 12897672
Alignment:
Q  175 aataagtgatgagatattgtaaaaacaagaaggaatcataccagacaaattgttcacaccccaatttaaaattgtcaagcttttgaggtgacatatttct 274  Q
    |||||||||||||||||| |||| ||||||||||||| |||| ||||||||||| |||| | ||  ||||  |||||||  |||||||  ||||||||||    
T  12897995 aataagtgatgagatattataaagacaagaaggaatcttaccggacaaattgttgacactcaaacctaaatatgtcaagtgtttgaggaaacatatttct 12897896  T
Q  275 tgtggaatatctccttctaagttgttatacacaaa-tgaaaaatcggttaagcttgaaagattccctatgaatgaagggattcctccagttaatttattt 373  Q
    |||||||||||||| || || ||||| | || ||| ||| | |   ||||||||||||||||| || |||||||||||||||||||| ||||| || ||     
T  12897895 tgtggaatatctccctcaaaattgtt-ttcagaaactgacagacgtgttaagcttgaaagatttccaatgaatgaagggattcctccggttaaattgtta 12897797  T
Q  374 ttccaaatggccaatgattgaagttttttcaaagagctaatttcatttggtatcttgccaattaaattgttccctcccaaatctaagtctttaagattgg 473  Q
    |||| ||    || ||||||||| |||||||||||||  | |||| ||||||| || ||||| | || ||||||   |||||  ||    || |||||||    
T  12897796 ttccgaacaaacattgattgaagctttttcaaagagccgaattcagttggtattttaccaatgagatggttcccattcaaatacaataacttgagattgg 12897697  T
Q  474 agcaatatgtgaggtttgtaggaat 498  Q
    |||||||||| ||||||||||||||    
T  12897696 agcaatatgtcaggtttgtaggaat 12897672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 122 - 426
Target Start/End: Complemental strand, 12956561 - 12956257
Alignment:
Q  122 aacatgttgggtggaagagagccataaaagttattcattgttagtgtgagctcaataagtgatgagatattgtaaaaacaagaaggaatcataccagaca 221  Q
    |||||||||||||||| |||||||| || ||||||   |||||  |  ||  ||||||||||||||||||| |||| ||||||||||||| |||| ||||    
T  12956561 aacatgttgggtggaaaagagccatgaaggttattttgtgttaccgcaagggcaataagtgatgagatattataaagacaagaaggaatcttaccggaca 12956462  T
Q  222 aattgttcacaccccaatttaaaattgtcaagcttttgaggtgacatatttcttgtggaatatctccttctaagttgttatacacaaatgaaaaatcggt 321  Q
    |||||||| ||||| ||  ||||| |||||||  ||||  |  |||||||||||||||||||||||| || || ||||||     |  ||| | |   ||    
T  12956461 aattgttctcacccaaagctaaaaatgtcaagtgtttgcagcaacatatttcttgtggaatatctccctcaaaattgttacgagaagctgatagacgtgt 12956362  T
Q  322 taagcttgaaagattccctatgaatgaagggattcctccagttaatttatttttccaaatggccaatgattgaagttttttcaaagagctaatttcattt 421  Q
    ||||||||||||||| |||||||||||||||||||| |||||||| || ||| ||||||  | || |  |||||| |||||||||||||  |||||| ||    
T  12956361 taagcttgaaagatttcctatgaatgaagggattccaccagttaacttgtttctccaaacagtcattctttgaagctttttcaaagagccgatttcagtt 12956262  T
Q  422 ggtat 426  Q
    |||||    
T  12956261 ggtat 12956257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 175 - 498
Target Start/End: Complemental strand, 12905617 - 12905293
Alignment:
Q  175 aataagtgatgagatattgtaaaaacaagaaggaatcataccagacaaattg-ttcacaccccaatttaaaattgtcaagcttttgaggtgacatatttc 273  Q
    |||||||||||||||||| |||| ||||||||| ||| |||| ||||||||| ||| ||||| ||  ||||| |||||||  |||||||  |||||||||    
T  12905617 aataagtgatgagatattataaagacaagaaggtatcttaccggacaaattgtttctcacccaaagctaaaaatgtcaagtgtttgaggaaacatatttc 12905518  T
Q  274 ttgtggaatatctccttctaagttgttatacacaaa-tgaaaaatcggttaagcttgaaagattccctatgaatgaagggattcctccagttaatttatt 372  Q
    ||||||||||||||| || || ||||||  || ||| ||| | |   ||||||||||||| ||| |||||||||||||||||||| || ||||| || ||    
T  12905517 ttgtggaatatctccctcaaaattgtta-ccagaaactgatagacgtgttaagcttgaaatatttcctatgaatgaagggattccaccggttaacttgtt 12905419  T
Q  373 tttccaaatggccaatgattgaagttttttcaaagagctaatttcatttggtatcttgccaattaaattgttccctcccaaatctaagtctttaagattg 472  Q
    | ||||||    || || |||||| |||||||||||||  |||||| ||||||| || ||||| | || ||||||   |||||  ||    || ||||||    
T  12905418 tctccaaacactcattgtttgaagctttttcaaagagccgatttcagttggtattttaccaatgagatggttcccattcaaatacaataacttgagattg 12905319  T
Q  473 gagcaatatgtgaggtttgtaggaat 498  Q
    ||||||||||| ||||||||||||||    
T  12905318 gagcaatatgtcaggtttgtaggaat 12905293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 122 - 360
Target Start/End: Complemental strand, 12947124 - 12946886
Alignment:
Q  122 aacatgttgggtggaagagagccataaaagttattcattgttagtgtgagctcaataagtgatgagatattgtaaaaacaagaaggaatcataccagaca 221  Q
    ||||||||||||| || |||||||| || || ||||| |||||  |  ||  ||||||||||||||||||| |||| ||||||||||||| |||| ||||    
T  12947124 aacatgttgggtgcaaaagagccatgaaggtgattcagtgttaccgaaaggacaataagtgatgagatattataaagacaagaaggaatcttaccggaca 12947025  T
Q  222 aattgttcacaccccaatttaaaattgtcaagcttttgaggtgacatatttcttgtggaatatctccttctaagttgttatacacaaatgaaaaatcg-g 320  Q
    |||||||| ||  | ||  ||||| |||||||  ||||||   |||||||||||||||||| ||||| || || ||||| | || |||  || |  || |    
T  12947024 aattgttctcattcaaagctaaaaatgtcaagtgtttgagaaaacatatttcttgtggaatgtctccctcaaaattgtt-ttcagaaactaatagacgtg 12946926  T
Q  321 ttaagcttgaaagattccctatgaatgaagggattcctcc 360  Q
    |||||||||||||||| || ||||||||||||||||||||    
T  12946925 ttaagcttgaaagatttccaatgaatgaagggattcctcc 12946886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 122 - 282
Target Start/End: Complemental strand, 12930759 - 12930599
Alignment:
Q  122 aacatgttgggtggaagagagccataaaagttattcattgttagtgtgagctcaataagtgatgagatattgtaaaaacaagaaggaatcataccagaca 221  Q
    |||||||||||||||| |||||||| || || ||||  |||||  || ||   |||||||||||||||||| |||| ||||||||||||| |||| ||||    
T  12930759 aacatgttgggtggaaaagagccatgaaggtgattctgtgttaccgtaagggaaataagtgatgagatattataaagacaagaaggaatcttaccggaca 12930660  T
Q  222 aattgttcacaccccaatttaaaattgtcaagcttttgaggtgacatatttcttgtggaat 282  Q
    |||||||| ||| |  |  |||||||||||||  |||||||  ||||||||||||||||||    
T  12930659 aattgttctcactcacacctaaaattgtcaagtgtttgaggaaacatatttcttgtggaat 12930599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 9e-28; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 175 - 498
Target Start/End: Original strand, 17925185 - 17925508
Alignment:
Q  175 aataagtgatgagatattgtaaaaacaagaaggaatcataccagacaaattgttcacaccccaatttaaaattgtcaagcttttgaggtgacatatttct 274  Q
    ||||||||||||||| || |||| |||||| |||||| |||| || ||||||||| ||||| ||  ||||| |||||||  |||| ||  ||||||||||    
T  17925185 aataagtgatgagatgttataaagacaagatggaatcttaccggaaaaattgttctcacccaaagctaaaaatgtcaagtgtttgcggcaacatatttct 17925284  T
Q  275 tgtggaatatctccttctaagttgttatacacaaatgaaaaatcggttaagcttgaaagattccctatgaatgaagggattcctccagttaatttatttt 374  Q
    |||||||||||||| || || ||||||    ||  ||| | |   ||||||| ||||||||| ||||||||||||||||||||||||||||| || || |    
T  17925285 tgtggaatatctccctcaaaattgttaagagcagctgatagacgtgttaagcatgaaagatttcctatgaatgaagggattcctccagttaaattgttat 17925384  T
Q  375 tccaaatggccaatgattgaagttttttcaaagagctaatttcatttggtatcttgccaattaaattgttccctcccaaatctaagtctttaagattgga 474  Q
     |  ||  | ||  | ||||||||||||||||||||  |||||| ||||||| || ||||| | || |||||| | ||||   ||   ||| ||||| ||    
T  17925385 gcgcaacagtcatggcttgaagttttttcaaagagccgatttcagttggtattttaccaatgagatggttcccactcaaaaacaataatttgagattaga 17925484  T
Q  475 gcaatatgtgaggtttgtaggaat 498  Q
     |||||||| ||||||||||||||    
T  17925485 acaatatgtcaggtttgtaggaat 17925508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 105
Target Start/End: Original strand, 31468804 - 31468853
Alignment:
Q  56 gcatttgttttggaagtggggattggacctgagaattgatttcccccaat 105  Q
    ||||||| | ||||||| ||||||||||||||||||||||| || |||||    
T  31468804 gcatttgatatggaagttgggattggacctgagaattgattcccaccaat 31468853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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