View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2585_low_14 (Length: 483)
Name: NF2585_low_14
Description: NF2585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2585_low_14 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 428; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 15 - 474
Target Start/End: Complemental strand, 34217170 - 34216711
Alignment:
| Q |
15 |
agattttgatgtgtctggcaacttcattctcatatgcttcaaaaagccatcagtgttgtcacaatctaatttcactttcctaacacaaccatccgaccaa |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
34217170 |
agattttgatgtgtctggcaacttcattctcatatgcttcaaaaagccatcattgttgtcacaatctaacttcactttcctaacacaaccatccgaccaa |
34217071 |
T |
|
| Q |
115 |
ttttgtgaactccagtttgcttgagattttggaatgaagccttcaagacattcacatactggtgagttatcaatatcacagttagaatttgcaccacaga |
214 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
34217070 |
ttttgtaaactccagtttgcttgagactttggaacgaaaccttcaagacattcacatactggtgacttatcaatatcacagttagaatttgcaccacaga |
34216971 |
T |
|
| Q |
215 |
tagcataattatcacaactgtctgcaggtccgacaaagaaaagttgccaactatttgtctgattcgacaacatgtatcgcgctatttgaccagttgaaga |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
34216970 |
tagcataattatcacaactgtctgcaggtccgacaaagaaaagttgccaactatttgtctgatccgacaacatgtatcgcgctatttgaccagttgaaga |
34216871 |
T |
|
| Q |
315 |
taccaagtatcttgaaacaacagacttgttcaaaagttcatatccataagaaatttccttctcagtaatcacaaatgaaaagttataggctttgtaaagt |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34216870 |
taccaagtatcttgaaacaacagacttgttcaaaagttcatatccataagaaatttccttctcagtaatcacaaatgaaaagttataggctttgtaaagt |
34216771 |
T |
|
| Q |
415 |
gtctcagaaggaattcctgataaaattcttccattccatgaacctattctaaagaataat |
474 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34216770 |
gtctcagaaggaattcctgataaaattcttccattccatgaacctattctaaagaataat |
34216711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 15 - 474
Target Start/End: Original strand, 34194406 - 34194865
Alignment:
| Q |
15 |
agattttgatgtgtctggcaacttcattctcatatgcttcaaaaagccatcagtgttgtcacaatctaatttcactttcctaacacaaccatccgaccaa |
114 |
Q |
| |
|
|||||||||||| |||||||||||||||| |||| | |||||||||| ||| |||||||||||||||| | ||| |||||||||||||||| | |||| |
|
|
| T |
34194406 |
agattttgatgtatctggcaacttcattcccatacgtttcaaaaagcgatccctgttgtcacaatctaactgaactctcctaacacaaccatcagtccaa |
34194505 |
T |
|
| Q |
115 |
ttttgtgaactccagtttgcttgagattttggaatgaagccttcaagacattcacatactggtgagttatcaatatcacagttagaatttgcaccacaga |
214 |
Q |
| |
|
||||| |||||||| ||| | ||||||||||||||||| |||| || ||||||||||| ||| || |||||||||||||| ||||||||||||||||| | |
|
|
| T |
34194506 |
ttttgggaactccacttttcctgagattttggaatgaaacctttaaaacattcacatattggagaattatcaatatcacaattagaatttgcaccacaaa |
34194605 |
T |
|
| Q |
215 |
tagcataattatcacaactg-tctgcaggtccgacaaagaaaagttgccaactatttgtctgattcgacaacatgtatcgcgctatttgaccagttgaag |
313 |
Q |
| |
|
|||||||||||| | |||| || | ||| || ||||||| |||||||||||| |||||||||| ||||||||||| |||| || |||||| ||| || |
|
|
| T |
34194606 |
gagcataattatcgc-actgatccgaaggaccaacaaagacaagttgccaactctttgtctgatcggacaacatgtaacgcgatacttgaccgattggag |
34194704 |
T |
|
| Q |
314 |
ataccaagtatcttgaaacaacagacttgttcaaaagttcatatccataagaaatttccttctcagtaatcacaaatgaaaagttataggctttgtaaag |
413 |
Q |
| |
|
|| || ||| |||||||||| ||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||| || ||| ||||||||| |
|
|
| T |
34194705 |
ttagcatgtaccttgaaacaatggacttgtccaaaagttcatatccataagaaacttccttttcagtaatcacaaatgaaatattgaaggatttgtaaag |
34194804 |
T |
|
| Q |
414 |
tgtctcagaaggaattcctgataaaattcttccattccatgaacctattctaaagaataat |
474 |
Q |
| |
|
||| ||||| ||||| ||||||| |||||||||||||||||| |||||| |||||| |
|
|
| T |
34194805 |
cgtcgtagaagagattccggataaaaaatttccattccatgaacctactctaaataataat |
34194865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 15 - 464
Target Start/End: Complemental strand, 34205745 - 34205296
Alignment:
| Q |
15 |
agattttgatgtgtctggcaacttcattctcatatgcttcaaaaagccatcagtgttgtcacaatctaatttcactttcctaacacaaccatccgaccaa |
114 |
Q |
| |
|
|||||||||||| || ||||||||||||| |||| | || |||||| ||| |||||||||||||||| | ||| ||||||||||||||||||||||| |
|
|
| T |
34205745 |
agattttgatgtatcaggcaacttcattcccatacgttttgaaaagcgatccctgttgtcacaatctaactgaactctcctaacacaaccatccgaccaa |
34205646 |
T |
|
| Q |
115 |
ttttgtgaactccagtttgcttgagattttggaatgaagccttcaagacattcacatactggtgagttatcaatatcacagttagaatttgcaccacaga |
214 |
Q |
| |
|
|||||||| |||| ||| ||| ||| || |||||||| |||| ||||||||||||| |||||| ||||| | |||||| ||||||||||||||||||| |
|
|
| T |
34205645 |
atttgtgaattccacttttctttagacttcggaatgaaacctttaagacattcacatgctggtgtgttattaggatcacaattagaatttgcaccacaga |
34205546 |
T |
|
| Q |
215 |
tagcataattatcacaactgtctgcaggtccgacaaagaaaagttgccaactatttgtctgattcgacaacatgtatcgcgctatttgaccagttgaaga |
314 |
Q |
| |
|
|| ||| |||||||||||||||||||| || | ||||||||||| |||| ||| |||| | ||| || ||||| |||| ||||| || || || | |
|
|
| T |
34205545 |
taagatagttatcacaactgtctgcagggccaagaaagaaaagttcaaaactctttttctggtccgaaaatatgtaacgcgtcatttgccctgtcgatgt |
34205446 |
T |
|
| Q |
315 |
taccaagtatcttgaaacaacagacttgttcaaaagttcatatccataagaaatttccttctcagtaatcacaaatgaaaagttataggctttgtaaagt |
414 |
Q |
| |
|
| || ||| |||||||| | || | ||||||||||||||||||||||| |||| ||||||||| | ||| | || ||| || | |||||| |
|
|
| T |
34205445 |
gagcatgtaccttgaaactattgatgattccaaaagttcatatccataagaaacttccgtctcagtaaaaaaaaaagtgaaattaaagtttgagtaaagc |
34205346 |
T |
|
| Q |
415 |
gtctcagaaggaattcctgataaaattcttccattccatgaacctattct |
464 |
Q |
| |
|
||| |||||||||||| | ||| || |||||||||||||||||||||| |
|
|
| T |
34205345 |
gtcgtagaaggaattccagttaacatatttccattccatgaacctattct |
34205296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University