View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2585_low_17 (Length: 438)

Name: NF2585_low_17
Description: NF2585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2585_low_17
NF2585_low_17
[»] chr3 (10 HSPs)
chr3 (18-282)||(39872032-39872296)
chr3 (18-191)||(3026768-3026940)
chr3 (25-191)||(39870454-39870619)
chr3 (40-191)||(3025823-3025974)
chr3 (360-424)||(39872374-39872438)
chr3 (18-191)||(25529804-25529976)
chr3 (134-191)||(3150021-3150078)
chr3 (132-192)||(5377806-5377866)
chr3 (144-193)||(48568542-48568591)
chr3 (139-191)||(27662664-27662716)
[»] chr1 (11 HSPs)
chr1 (18-191)||(32847814-32847987)
chr1 (18-191)||(11431215-11431388)
chr1 (18-191)||(11429226-11429399)
chr1 (18-191)||(32849815-32849988)
chr1 (22-190)||(35381385-35381553)
chr1 (18-191)||(35382939-35383115)
chr1 (134-188)||(40767618-40767672)
chr1 (134-191)||(12095877-12095934)
chr1 (132-191)||(9627581-9627640)
chr1 (141-192)||(13222913-13222964)
chr1 (134-191)||(12097942-12097999)
[»] chr7 (5 HSPs)
chr7 (18-191)||(37547934-37548107)
chr7 (58-191)||(32429796-32429929)
chr7 (18-191)||(37556418-37556591)
chr7 (134-191)||(38758319-38758376)
chr7 (132-193)||(28556244-28556305)
[»] chr5 (3 HSPs)
chr5 (18-191)||(41281874-41282047)
chr5 (134-191)||(33489901-33489958)
chr5 (244-280)||(22650266-22650302)
[»] chr8 (2 HSPs)
chr8 (132-191)||(7272900-7272959)
chr8 (134-191)||(7274653-7274710)
[»] chr2 (8 HSPs)
chr2 (134-191)||(16288976-16289033)
chr2 (40-111)||(9261541-9261612)
chr2 (141-192)||(9262901-9262952)
chr2 (141-188)||(28167339-28167386)
chr2 (134-191)||(28165658-28165715)
chr2 (132-189)||(42928937-42928994)
chr2 (141-193)||(9261461-9261513)
chr2 (143-191)||(44906146-44906194)
[»] chr4 (4 HSPs)
chr4 (141-191)||(11148350-11148400)
chr4 (132-201)||(2672963-2673032)
chr4 (132-191)||(29757608-29757667)
chr4 (134-191)||(2671541-2671598)
[»] scaffold0280 (1 HSPs)
scaffold0280 (134-207)||(12115-12188)
[»] scaffold0060 (1 HSPs)
scaffold0060 (132-191)||(13251-13310)


Alignment Details
Target: chr3 (Bit Score: 164; Significance: 2e-87; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 18 - 282
Target Start/End: Original strand, 39872032 - 39872296
Alignment:
Q  18 catgtgtcacgtaggcgtccaatagccagcaatgcatttctttcacggaacctgacatcagggaggagttccaaaacgtttggtaattacaagggctatt 117  Q
    |||||| |||||||||||||| ||| |||||| |||||||||||||||||||||||| |||| |  ||||||||||||| ||||||||||||||||||||    
T  39872032 catgtgccacgtaggcgtccattagtcagcaaagcatttctttcacggaacctgacagcaggaacaagttccaaaacgtatggtaattacaagggctatt 39872131  T
Q  118 tcgcaagnnnnnnncttacaggaactaaaaccaaaaacgcgtcaacttacagaaaccttttacttatttaagccaagattttatttgaatcctctcattc 217  Q
    |||||||       |||||| ||||| |||||||||| |||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||    
T  39872132 tcgcaagaaaaaaacttacacgaacttaaaccaaaaatgcgtcaacttacaaggaccttttacttatttaagccaagattttatttgaatcctctcattc 39872231  T
Q  218 tctcattgtccctccttccactaatatatctatctctttttaaatattatagagaagatcaagag 282  Q
    ||||||| | |||||||||||| ||| |||||||||||||||||||||| |||||||||||||||    
T  39872232 tctcattcttcctccttccactgatacatctatctctttttaaatattagagagaagatcaagag 39872296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 18 - 191
Target Start/End: Original strand, 3026768 - 3026940
Alignment:
Q  18 catgtgtcacgtaggcgtccaatagccagcaatgcatttctttcacggaacctgacatcagggaggagttccaaaacgtttggtaattacaagggctatt 117  Q
    |||||| |||||||||| ||  ||||||||||||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||| || ||||    
T  3026768 catgtgccacgtaggcgaccgttagccagcaatgcatttttttcacggaacctgacagcagggacgagttccaaaacgtttggtaattacaacggttatt 3026867  T
Q  118 tcgcaagnnnnnnncttacaggaactaaaaccaaaaacgcgtcaacttacagaaaccttttacttatttaagcc 191  Q
    |||||||       |||||||| |||||||||||||||| | ||||||||||  ||||||||||||||||||||    
T  3026868 tcgcaag-aaaaaacttacagggactaaaaccaaaaacgtgccaacttacagggaccttttacttatttaagcc 3026940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 25 - 191
Target Start/End: Complemental strand, 39870619 - 39870454
Alignment:
Q  25 cacgtaggcgtccaatagccagcaatgcatttctttcacggaacctgacatcagggaggagttccaaaacgtttggtaattacaagggctatttcgcaag 124  Q
    |||||||| ||||  |||||| |||||||||| ||||||||||  ||||  || ||| |||||||||||||||| ||||||||||||||| |||||||||    
T  39870619 cacgtaggtgtccgttagccaacaatgcattt-tttcacggaatttgacggcaaggacgagttccaaaacgtttcgtaattacaagggctgtttcgcaag 39870521  T
Q  125 nnnnnnncttacaggaactaaaaccaaaaacgcgtcaacttacagaaaccttttacttatttaagcc 191  Q
           |||||| |||||||||| |||||||||||||||||||  |||||||||||||||||||||    
T  39870520 aaaaaaacttacaagaactaaaacaaaaaacgcgtcaacttacaagaaccttttacttatttaagcc 39870454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 40 - 191
Target Start/End: Complemental strand, 3025974 - 3025823
Alignment:
Q  40 tagccagcaatgcatttctttcacggaacctgacatcagggaggagttccaaaacgtttggtaattacaagggctatttcgcaagnnnnnnncttacagg 139  Q
    ||||||||||||||||| ||||||||||| ||||  || | | |||||||||||||||| ||||||||||||||| ||| |||||       |||||| |    
T  3025974 tagccagcaatgcatttttttcacggaacttgacggcaagaacgagttccaaaacgttttgtaattacaagggctgttttgcaagaaaaaaacttacatg 3025875  T
Q  140 aactaaaaccaaaaacgcgtcaacttacagaaaccttttacttatttaagcc 191  Q
     |||||||| ||||| ||| |||||||||| |||||||||||||||||||||    
T  3025874 gactaaaacaaaaaatgcgccaacttacaggaaccttttacttatttaagcc 3025823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 360 - 424
Target Start/End: Original strand, 39872374 - 39872438
Alignment:
Q  360 gatattaaattacctaatttttgctaataactaattatactaggaaacttaaccggccctttagt 424  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  39872374 gatattaaattacctattttttgctaataactaattatactaggaaacttaaccggccctttagt 39872438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 18 - 191
Target Start/End: Original strand, 25529804 - 25529976
Alignment:
Q  18 catgtgtcacgtaggcgtccaatagccagcaatgcatttctttcacggaacctgacatcagggaggagttccaaaacgtttggtaattacaagggctatt 117  Q
    |||||| ||| |||||||||  ||||||||||  ||||| |||||| |||| ||||  |||||| |||||||||||| ||| ||||||||||||| | ||    
T  25529804 catgtgccacataggcgtccgttagccagcaaaccatttttttcacagaacttgacggcagggatgagttccaaaacatttagtaattacaagggttgtt 25529903  T
Q  118 tcgcaagnnnnnnncttacaggaactaaaaccaaaaacgcgtcaacttacagaaaccttttacttatttaagcc 191  Q
    |||||||       |||| ||| |||||||||||||||||| |||||||||   ||||||||||||||||||||    
T  25529904 tcgcaag-aaaaaacttatagggactaaaaccaaaaacgcgccaacttacaaggaccttttacttatttaagcc 25529976  T

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Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 134 - 191
Target Start/End: Original strand, 3150021 - 3150078
Alignment:
Q  134 tacaggaactaaaaccaaaaacgcgtcaacttacagaaaccttttacttatttaagcc 191  Q
    |||||| ||||||||||||||||||| |||||||||  ||||||||| ||||||||||    
T  3150021 tacagggactaaaaccaaaaacgcgttaacttacagggaccttttacatatttaagcc 3150078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 192
Target Start/End: Complemental strand, 5377866 - 5377806
Alignment:
Q  132 cttacaggaactaaaaccaaaaacgcgtcaacttacagaaaccttttacttatttaagcca 192  Q
    |||||||| |||||||| ||||| ||| ||| ||||||  |||||||||||||||||||||    
T  5377866 cttacagggactaaaacaaaaaatgcgccaatttacagggaccttttacttatttaagcca 5377806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 144 - 193
Target Start/End: Original strand, 48568542 - 48568591
Alignment:
Q  144 aaaaccaaaaacgcgtcaacttacagaaaccttttacttatttaagccaa 193  Q
    |||||||||||| ||  |||||||||| ||||||||| ||||||||||||    
T  48568542 aaaaccaaaaacacgcgaacttacagagaccttttacatatttaagccaa 48568591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 139 - 191
Target Start/End: Original strand, 27662664 - 27662716
Alignment:
Q  139 gaactaaaaccaaaaacgcgtcaacttacagaaaccttttacttatttaagcc 191  Q
    |||||||||| |||||||||  ||||||| |  ||||||||||||||||||||    
T  27662664 gaactaaaacaaaaaacgcgctaacttaccgggaccttttacttatttaagcc 27662716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 93; Significance: 4e-45; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 18 - 191
Target Start/End: Complemental strand, 32847987 - 32847814
Alignment:
Q  18 catgtgtcacgtaggcgtccaatagccagcaatgcatttctttcacggaacctgacatcagggaggagttccaaaacgtttggtaattacaagggctatt 117  Q
    |||||| |||||||||||||  ||||||||||  ||||| ||||||||||| ||||  |||||| |||||||||||||||||||||||||||||||| ||    
T  32847987 catgtgccacgtaggcgtccgttagccagcaaaccatttttttcacggaacttgacggcagggacgagttccaaaacgtttggtaattacaagggctgtt 32847888  T
Q  118 tcgcaagnnnnnnncttacaggaactaaaaccaaaaacgcgtcaacttacagaaaccttttacttatttaagcc 191  Q
    |||||||       |||||||| |||||||||||||||||| ||||||||||  ||||||||||||||||||||    
T  32847887 tcgcaagaaaaaaacttacagggactaaaaccaaaaacgcgccaacttacagggaccttttacttatttaagcc 32847814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 18 - 191
Target Start/End: Original strand, 11431215 - 11431388
Alignment:
Q  18 catgtgtcacgtaggcgtccaatagccagcaatgcatttctttcacggaacctgacatcagggaggagttccaaaacgtttggtaattacaagggctatt 117  Q
    |||||| |||||||||||||  ||| ||||||  ||||| ||||||||||||||||  |||||| ||||||||||| |||||||||||||||||||| ||    
T  11431215 catgtgccacgtaggcgtccgttagtcagcaaaccatttttttcacggaacctgacggcagggacgagttccaaaatgtttggtaattacaagggctgtt 11431314  T
Q  118 tcgcaagnnnnnnncttacaggaactaaaaccaaaaacgcgtcaacttacagaaaccttttacttatttaagcc 191  Q
    |||||||       |||||||| |||||||| ||||||||| ||||||||||  ||||||||||||||||||||    
T  11431315 tcgcaagaaaaaaacttacagggactaaaacgaaaaacgcgccaacttacagggaccttttacttatttaagcc 11431388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 18 - 191
Target Start/End: Complemental strand, 11429399 - 11429226
Alignment:
Q  18 catgtgtcacgtaggcgtccaatagccagcaatgcatttctttcacggaacctgacatcagggaggagttccaaaacgtttggtaattacaagggctatt 117  Q
    |||||| ||||||||||||   |||||||||| |||||| ||||||||||||||||   ||||| |||||||||||||| ||||||||| ||||| | ||    
T  11429399 catgtgccacgtaggcgtctgttagccagcaaagcatttttttcacggaacctgacggaagggatgagttccaaaacgtatggtaattataagggttgtt 11429300  T
Q  118 tcgcaagnnnnnnncttacaggaactaaaaccaaaaacgcgtcaacttacagaaaccttttacttatttaagcc 191  Q
    |||||||        || |||| |||||||| ||||||||| ||| ||||||| ||||||||||||||||||||    
T  11429299 tcgcaagaaaaaaatttgcagggactaaaacaaaaaacgcgccaatttacagagaccttttacttatttaagcc 11429226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 18 - 191
Target Start/End: Original strand, 32849815 - 32849988
Alignment:
Q  18 catgtgtcacgtaggcgtccaatagccagcaatgcatttctttcacggaacctgacatcagggaggagttccaaaacgtttggtaattacaagggctatt 117  Q
    |||||| ||||||||||||   |||| |||||  ||||| ||||||||||||||||  |||||| |||||||||||||| ||||||||||||||| | ||    
T  32849815 catgtgccacgtaggcgtctgttagctagcaaaccatttttttcacggaacctgacggcagggatgagttccaaaacgtgtggtaattacaagggttgtt 32849914  T
Q  118 tcgcaagnnnnnnncttacaggaactaaaaccaaaaacgcgtcaacttacagaaaccttttacttatttaagcc 191  Q
    |||||||        || |||| |||||||| ||||||||| ||| ||||||  ||||||||||||||||||||    
T  32849915 tcgcaagaaaaaaaattgcagggactaaaacaaaaaacgcgccaatttacagggaccttttacttatttaagcc 32849988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 22 - 190
Target Start/End: Complemental strand, 35381553 - 35381385
Alignment:
Q  22 tgtcacgtaggcgtccaatagccagcaatgcatttctttcacggaacctgacatcagggaggagttccaaaacgtttggtaattacaagggctatttcgc 121  Q
    ||||| ||||| ||||  || |||||| ||||||| ||||||||||| |||   || ||| |||||||||||||||| |||||||| |||||| ||||||    
T  35381553 tgtcatgtaggtgtccgttatccagcattgcatttttttcacggaacttgatggcaaggacgagttccaaaacgttttgtaattacgagggctgtttcgc 35381454  T
Q  122 aagnnnnnnncttacaggaactaaaaccaaaaacgcgtcaacttacagaaaccttttacttatttaagc 190  Q
    |||       ||| || | |||||||||||||||||| ||||||||||  |||||||||||||||||||    
T  35381453 aaggaaaaaacttgcatggactaaaaccaaaaacgcgccaacttacaggtaccttttacttatttaagc 35381385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 18 - 191
Target Start/End: Original strand, 35382939 - 35383115
Alignment:
Q  18 catgtgtcacgtaggcgtccaatagccagcaatgcatttcttt----cacggaacctgacatcagggaggagttccaaaacgtttggtaattacaagggc 113  Q
    ||||||||||||||||||||  |||||||||||| |||| |||    |||||||||||||  || ||| |||||||||||||| ||| ||||||||||      
T  35382939 catgtgtcacgtaggcgtccgttagccagcaatgtatttttttttttcacggaacctgacggcatggacgagttccaaaacgtctggaaattacaaggt- 35383037  T
Q  114 tatttcgcaagnnnnnnncttacaggaactaaaaccaaaaacgcgtcaacttacagaaaccttttacttatttaagcc 191  Q
    | |||||||||       |||||||| |||||||||||||||||| |||||||  |  ||||||||||||||||||||    
T  35383038 tgtttcgcaagaaaaaaacttacagggactaaaaccaaaaacgcgccaacttatcgggaccttttacttatttaagcc 35383115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 134 - 188
Target Start/End: Complemental strand, 40767672 - 40767618
Alignment:
Q  134 tacaggaactaaaaccaaaaacgcgtcaacttacagaaaccttttacttatttaa 188  Q
    |||||| ||||||||||||||||||  |||||||||| ||||||||| |||||||    
T  40767672 tacagggactaaaaccaaaaacgcgcaaacttacagagaccttttacatatttaa 40767618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 134 - 191
Target Start/End: Complemental strand, 12095934 - 12095877
Alignment:
Q  134 tacaggaactaaaaccaaaaacgcgtcaacttacagaaaccttttacttatttaagcc 191  Q
    |||||| |||||||||||||||||   |||||||||  ||||||||||||||||||||    
T  12095934 tacagggactaaaaccaaaaacgcacgaacttacagggaccttttacttatttaagcc 12095877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 132 - 191
Target Start/End: Original strand, 9627581 - 9627640
Alignment:
Q  132 cttacaggaactaaaaccaaaaacgcgtcaacttacagaaaccttttacttatttaagcc 191  Q
    ||||||||||| ||||| ||||| |||  |||||||||| ||||||||| ||||||||||    
T  9627581 cttacaggaacgaaaacaaaaaatgcgcgaacttacagagaccttttacatatttaagcc 9627640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 141 - 192
Target Start/End: Complemental strand, 13222964 - 13222913
Alignment:
Q  141 actaaaaccaaaaacgcgtcaacttacagaaaccttttacttatttaagcca 192  Q
    |||||||||||||||| |  |||||||||  |||||||||||||||||||||    
T  13222964 actaaaaccaaaaacgtgctaacttacagggaccttttacttatttaagcca 13222913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 134 - 191
Target Start/End: Original strand, 12097942 - 12097999
Alignment:
Q  134 tacaggaactaaaaccaaaaacgcgtcaacttacagaaaccttttacttatttaagcc 191  Q
    |||||| |||||||||||||| |||  ||||||| |  ||||||||||||||||||||    
T  12097942 tacagggactaaaaccaaaaatgcgcgaacttacggggaccttttacttatttaagcc 12097999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 81; Significance: 6e-38; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 18 - 191
Target Start/End: Complemental strand, 37548107 - 37547934
Alignment:
Q  18 catgtgtcacgtaggcgtccaatagccagcaatgcatttctttcacggaacctgacatcagggaggagttccaaaacgtttggtaattacaagggctatt 117  Q
    |||||| |||||||||||||  ||||||||||  ||||| ||||||||||| |||   |||||| |||||||||||||||||||||||||||||||| ||    
T  37548107 catgtgccacgtaggcgtccgttagccagcaaaccatttttttcacggaacttgatggcagggacgagttccaaaacgtttggtaattacaagggctgtt 37548008  T
Q  118 tcgcaagnnnnnnncttacaggaactaaaaccaaaaacgcgtcaacttacagaaaccttttacttatttaagcc 191  Q
    |||||||       |||||||| |||||||||||||||||  |||||||||   ||||||||||||||||||||    
T  37548007 tcgcaagaaaaaaacttacagggactaaaaccaaaaacgcaccaacttacaaggaccttttacttatttaagcc 37547934  T

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Target: chr7; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 58 - 191
Target Start/End: Original strand, 32429796 - 32429929
Alignment:
Q  58 tttcacggaacctgacatcagggaggagttccaaaacgtttggtaattacaagggctatttcgcaagnnnnnnncttacaggaactaaaaccaaaaacgc 157  Q
    |||||||||||||| |  |||||| |||||||||||||||||||||||||||||| |||||||||||       |||||||| |||||||||||||||||    
T  32429796 tttcacggaacctggcggcagggacgagttccaaaacgtttggtaattacaagggttatttcgcaagaaaaaaacttacagggactaaaaccaaaaacgc 32429895  T
Q  158 gtcaacttacagaaaccttttacttatttaagcc 191  Q
    | ||||||||||  || |||||||||||||||||    
T  32429896 gccaacttacagggactttttacttatttaagcc 32429929  T

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Target: chr7; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 18 - 191
Target Start/End: Original strand, 37556418 - 37556591
Alignment:
Q  18 catgtgtcacgtaggcgtccaatagccagcaatgcatttctttcacggaacctgacatcagggaggagttccaaaacgtttggtaattacaagggctatt 117  Q
    |||||| ||||||||||||   |||| |||||  ||||| ||||||||||||||||  |||||| |||||||||||||| ||||||||||||||| | ||    
T  37556418 catgtgccacgtaggcgtctgttagctagcaaaccatttttttcacggaacctgacggcagggatgagttccaaaacgtgtggtaattacaagggttgtt 37556517  T
Q  118 tcgcaagnnnnnnncttacaggaactaaaaccaaaaacgcgtcaacttacagaaaccttttacttatttaagcc 191  Q
    |||||||        || |||| |||||||| ||||||||  ||| ||||||  ||||||||||||||||||||    
T  37556518 tcgcaagaaaaaaaattgcagggactaaaacaaaaaacgcaccaatttacagggaccttttacttatttaagcc 37556591  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 134 - 191
Target Start/End: Original strand, 38758319 - 38758376
Alignment:
Q  134 tacaggaactaaaaccaaaaacgcgtcaacttacagaaaccttttacttatttaagcc 191  Q
    |||||| ||||||||||||||||||  |||||||||  ||||||||||||||||||||    
T  38758319 tacagggactaaaaccaaaaacgcgctaacttacagggaccttttacttatttaagcc 38758376  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 193
Target Start/End: Complemental strand, 28556305 - 28556244
Alignment:
Q  132 cttacaggaactaaaaccaaaaacgcgtcaacttacagaaaccttttacttatttaagccaa 193  Q
    |||||||  ||||||||||||||| ||  || ||||||| ||||||||| ||||||||||||    
T  28556305 cttacagagactaaaaccaaaaacacgctaaattacagataccttttacatatttaagccaa 28556244  T

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Target: chr5 (Bit Score: 69; Significance: 8e-31; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 18 - 191
Target Start/End: Complemental strand, 41282047 - 41281874
Alignment:
Q  18 catgtgtcacgtaggcgtccaatagccagcaatgcatttctttcacggaacctgacatcagggaggagttccaaaacgtttggtaattacaagggctatt 117  Q
    |||||| |||||||||||||  |||||| |||  ||||| ||||||||||||||||  |||||| |||||||||||||||||||||||||||||| | ||    
T  41282047 catgtgccacgtaggcgtccgttagccaacaaaccatttttttcacggaacctgacggcagggacgagttccaaaacgtttggtaattacaagggttgtt 41281948  T
Q  118 tcgcaagnnnnnnncttacaggaactaaaaccaaaaacgcgtcaacttacagaaaccttttacttatttaagcc 191  Q
    |||||||        ||||   ||||||||| |||||| | |||||||||||  ||||||||||||||||||||    
T  41281947 tcgcaagaaaaaaatttaccataactaaaacaaaaaacacatcaacttacagggaccttttacttatttaagcc 41281874  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 134 - 191
Target Start/End: Original strand, 33489901 - 33489958
Alignment:
Q  134 tacaggaactaaaaccaaaaacgcgtcaacttacagaaaccttttacttatttaagcc 191  Q
    |||||| |||||||| |||||||||  |||||||||  || |||||||||||||||||    
T  33489901 tacagggactaaaacgaaaaacgcgctaacttacagggacattttacttatttaagcc 33489958  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 244 - 280
Target Start/End: Original strand, 22650266 - 22650302
Alignment:
Q  244 tatctatctctttttaaatattatagagaagatcaag 280  Q
    ||||||||||||| ||||||||| |||||||||||||    
T  22650266 tatctatctctttataaatattagagagaagatcaag 22650302  T

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Target: chr8 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 132 - 191
Target Start/End: Complemental strand, 7272959 - 7272900
Alignment:
Q  132 cttacaggaactaaaaccaaaaacgcgtcaacttacagaaaccttttacttatttaagcc 191  Q
    |||||||| |||||||||||||| ||| ||||||||||| ||||||||||||||||||||    
T  7272959 cttacagggactaaaaccaaaaatgcgccaacttacagagaccttttacttatttaagcc 7272900  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 134 - 191
Target Start/End: Original strand, 7274653 - 7274710
Alignment:
Q  134 tacaggaactaaaaccaaaaacgcgtcaacttacagaaaccttttacttatttaagcc 191  Q
    ||||||||||||||| ||||| |||  |||||||||  ||||||| ||||||||||||    
T  7274653 tacaggaactaaaacaaaaaatgcgcgaacttacagggacctttttcttatttaagcc 7274710  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 134 - 191
Target Start/End: Original strand, 16288976 - 16289033
Alignment:
Q  134 tacaggaactaaaaccaaaaacgcgtcaacttacagaaaccttttacttatttaagcc 191  Q
    ||||||||||||||| ||||||||||||||||||||  | ||||||| ||||||||||    
T  16288976 tacaggaactaaaacaaaaaacgcgtcaacttacagggatcttttacatatttaagcc 16289033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 40 - 111
Target Start/End: Complemental strand, 9261612 - 9261541
Alignment:
Q  40 tagccagcaatgcatttctttcacggaacctgacatcagggaggagttccaaaacgtttggtaattacaagg 111  Q
    |||||| |||||||||| ||||||||||||||||  |||||| || || ||||| || ||||||||||||||    
T  9261612 tagccaacaatgcatttttttcacggaacctgacggcagggacgactttcaaaatgtctggtaattacaagg 9261541  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 141 - 192
Target Start/End: Original strand, 9262901 - 9262952
Alignment:
Q  141 actaaaaccaaaaacgcgtcaacttacagaaaccttttacttatttaagcca 192  Q
    |||||||||||| |||||  ||||||||| ||||||||||||||||||||||    
T  9262901 actaaaaccaaatacgcgcgaacttacaggaaccttttacttatttaagcca 9262952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 141 - 188
Target Start/End: Original strand, 28167339 - 28167386
Alignment:
Q  141 actaaaaccaaaaacgcgtcaacttacagaaaccttttacttatttaa 188  Q
    ||||||||||||||||||  |||||||||  |||||||||||||||||    
T  28167339 actaaaaccaaaaacgcgctaacttacagggaccttttacttatttaa 28167386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 134 - 191
Target Start/End: Complemental strand, 28165715 - 28165658
Alignment:
Q  134 tacaggaactaaaaccaaaaacgcgtcaacttacagaaaccttttacttatttaagcc 191  Q
    |||||| ||||||||||||||||||  ||||||||   ||||||||| ||||||||||    
T  28165715 tacagggactaaaaccaaaaacgcgctaacttacatggaccttttacatatttaagcc 28165658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 189
Target Start/End: Complemental strand, 42928994 - 42928937
Alignment:
Q  132 cttacaggaactaaaaccaaaaacgcgtcaacttacagaaaccttttacttatttaag 189  Q
    |||||| |||| ||||||||||| |||  |||||||||| ||||||||| ||||||||    
T  42928994 cttacatgaacgaaaaccaaaaatgcgcgaacttacagagaccttttacatatttaag 42928937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 193
Target Start/End: Complemental strand, 9261513 - 9261461
Alignment:
Q  141 actaaaaccaaaaacgcgtcaacttacagaaaccttttacttatttaagccaa 193  Q
    |||||||||||| |||||  ||||||||   ||||||||||||||||||||||    
T  9261513 actaaaaccaaacacgcgcaaacttacattgaccttttacttatttaagccaa 9261461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 143 - 191
Target Start/End: Original strand, 44906146 - 44906194
Alignment:
Q  143 taaaaccaaaaacgcgtcaacttacagaaaccttttacttatttaagcc 191  Q
    ||||||||||||||||  |||||| ||  ||||||||||||||||||||    
T  44906146 taaaaccaaaaacgcgctaacttatagggaccttttacttatttaagcc 44906194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 141 - 191
Target Start/End: Complemental strand, 11148400 - 11148350
Alignment:
Q  141 actaaaaccaaaaacgcgtcaacttacagaaaccttttacttatttaagcc 191  Q
    ||||||||||||||||||  |||||||||  ||||||||||||||||||||    
T  11148400 actaaaaccaaaaacgcgctaacttacagggaccttttacttatttaagcc 11148350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 132 - 201
Target Start/End: Original strand, 2672963 - 2673032
Alignment:
Q  132 cttacaggaactaaaaccaaaaacgcgtcaacttacagaaaccttttacttatttaagccaagattttat 201  Q
    |||||| | |||||||||||||| ||| ||||||||| | | |||||||||||||||||| ||| |||||    
T  2672963 cttacaaggactaaaaccaaaaatgcgccaacttacatagatcttttacttatttaagcctagaatttat 2673032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 132 - 191
Target Start/End: Original strand, 29757608 - 29757667
Alignment:
Q  132 cttacaggaactaaaaccaaaaacgcgtcaacttacagaaaccttttacttatttaagcc 191  Q
    |||||||| || ||||||||||| |||| |||||||||  ||||||||| ||||||||||    
T  29757608 cttacagggacgaaaaccaaaaatgcgtgaacttacagggaccttttacatatttaagcc 29757667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 134 - 191
Target Start/End: Complemental strand, 2671598 - 2671541
Alignment:
Q  134 tacaggaactaaaaccaaaaacgcgtcaacttacagaaaccttttacttatttaagcc 191  Q
    |||||| |||||||||||||| |||  |||||||||  ||||||| ||||||||||||    
T  2671598 tacagggactaaaaccaaaaatgcgcgaacttacagggacctttttcttatttaagcc 2671541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0280 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0280
Description:

Target: scaffold0280; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 134 - 207
Target Start/End: Complemental strand, 12188 - 12115
Alignment:
Q  134 tacaggaactaaaaccaaaaacgcgtcaacttacagaaaccttttacttatttaagccaagattttatttgaat 207  Q
    |||||| || |||||||||||| ||  ||||||| | |||||||||| |||||||||| ||||||||| |||||    
T  12188 tacagggacgaaaaccaaaaacacgcgaacttaccggaaccttttacatatttaagcctagattttatatgaat 12115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 132 - 191
Target Start/End: Original strand, 13251 - 13310
Alignment:
Q  132 cttacaggaactaaaaccaaaaacgcgtcaacttacagaaaccttttacttatttaagcc 191  Q
    ||||||||||| ||||| ||||| |||| |||||||||  ||||||||| ||||||||||    
T  13251 cttacaggaacgaaaacaaaaaatgcgtgaacttacagggaccttttacatatttaagcc 13310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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