View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2585_low_18 (Length: 437)
Name: NF2585_low_18
Description: NF2585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2585_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 350; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 10 - 422
Target Start/End: Original strand, 7751943 - 7752353
Alignment:
| Q |
10 |
aagaaaattttcaaaagaaataataaagagcatgcatgaatgtacttgaaacaaaaacaaacctccactactccaagtcaaaagcaagtttgcagtcatt |
109 |
Q |
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| T |
7751943 |
aagaaaattttcaaaagaaataataaagagcatgcatgaatgtacttgaaacaaaaacaaacctccactactccaagtcaaaagcaagtttgcagtcatt |
7752042 |
T |
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| Q |
110 |
gtgattatccatgaagttagccaatttgtcaaggtagctatgctgccagcaagtccctttatattcacaggaagtatctagaaaacaagatcaagaagta |
209 |
Q |
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| T |
7752043 |
gtgattatccatgaagttagccaatttgtcaaggtagctatgctgccagcaagtccctttatattcacaggaagtatctagaaaacaagatcaagaagta |
7752142 |
T |
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| Q |
210 |
agaggttatttatgttcaaaaatgtgnnnnnnnntataagtgatccatgcgaatacacaagtatcttgttagtatagcactaaaacattccttatgattg |
309 |
Q |
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|||||||||||||||| ||||||||| |||| ||||||| ||||||||||||||||| |||||||||||||||||||||||| | || ||| |
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| T |
7752143 |
agaggttatttatgtttaaaaatgtgaaaaaaaatatatgtgatccgtgcgaatacacaagtatattgttagtatagcactaaaacattaat--tgtttg |
7752240 |
T |
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| Q |
310 |
atttataatctcttatgtttataaggtgaagtgaaaataaagtctaaattttacctcagacattataagccaagggattggtccaagtccaagagagtag |
409 |
Q |
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| T |
7752241 |
atttataatctcttatgtttataaggtgaagtgaaaataaagtctaaattttacctcagacattataagccaagggattggtccaagtccaagagagtag |
7752340 |
T |
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| Q |
410 |
ccaatcaccatag |
422 |
Q |
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| T |
7752341 |
ccaatcaccatag |
7752353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 84 - 175
Target Start/End: Original strand, 7771294 - 7771384
Alignment:
| Q |
84 |
aagtcaaaagcaagtttgcagtcattgtgattatccatgaagttagccaatttgtcaaggtagctatgctgccagcaagtccctttatattc |
175 |
Q |
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| T |
7771294 |
aagtcaaaagcaagtt-gcagtcattgtgattatccatgaagttaacgaatttgtcaaggtggctatgctgccagcaaggtcctttatattc |
7771384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 8e-28; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 61 - 188
Target Start/End: Complemental strand, 32932968 - 32932841
Alignment:
| Q |
61 |
caaaaacaaacctccactactccaagtcaaaagcaagtttgcagtcattgtgattatccatgaagttagccaatttgtcaaggtagctatgctgccagca |
160 |
Q |
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|||| ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| | ||||||||| | || ||| ||| | ||||||||| |
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| T |
32932968 |
caaacacaaacctccactgctccaagtcaaaagcaagtttgcagtcattgtgatgatccacgctactagccaattagccatggttgctgtactgccagca |
32932869 |
T |
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| Q |
161 |
agtccctttatattcacaggaagtatct |
188 |
Q |
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| T |
32932868 |
agaccctttatattcactggaagtatct |
32932841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 361 - 421
Target Start/End: Complemental strand, 32932617 - 32932557
Alignment:
| Q |
361 |
tacctcagacattataagccaagggattggtccaagtccaagagagtagccaatcaccata |
421 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||| | ||||| |||||| |
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| T |
32932617 |
tacctcagacattataagccaagggattggtccaagtcctagagagaacccaattaccata |
32932557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 361 - 404
Target Start/End: Complemental strand, 32938546 - 32938503
Alignment:
| Q |
361 |
tacctcagacattataagccaagggattggtccaagtccaagag |
404 |
Q |
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| T |
32938546 |
tacctcagacattataagccaagggattggtccaatgccaagag |
32938503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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