View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2585_low_20 (Length: 418)
Name: NF2585_low_20
Description: NF2585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2585_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 13 - 398
Target Start/End: Original strand, 2270807 - 2271199
Alignment:
| Q |
13 |
aaaattaaattgaaaccgtttacattcaacttcgtttttaattaattcaaaatcaatttttgttacctcataaacaagcatacacttcatcacctaatca |
112 |
Q |
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| T |
2270807 |
aaaattaaattgaaaccgtttacattcaacttcgtttttaattaattcaaaatcaatttttgttacctcataaacaaacatacacttcatcacctaatca |
2270906 |
T |
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| Q |
113 |
aactttaatttgaagtaaaatcaacaagtttgtgtttgattattttttggtgattactctccagtattcgggaaaatgagttaaggtaatttaga----- |
207 |
Q |
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| T |
2270907 |
aactttaatttgaagtaaaatcaacaagtttgtgtttgattattttttggtgataactctccagtattcggaaaaataagttatggtaatttagagttcg |
2271006 |
T |
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| Q |
208 |
---gagaagtaaataaagnnnnnnnaaaatttatctttgctagaacttattaatcacttgaacttaattatttgattactatgtgtttgagtttgacaaa |
304 |
Q |
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| T |
2271007 |
actgagaagtaaataaagtttttttaaaatttatctttgctagaacttattaaccacttgaacttaattatttgattactatgcatttgagtttgacaaa |
2271106 |
T |
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| Q |
305 |
aatagattttaaatattgaatttcctttaaagtaatttcaaacgttaaatgatttttgttaaactagatttcatatatgctctgattaattttc |
398 |
Q |
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| T |
2271107 |
aatagattttaaatattgaatttcctttaaagtaatttc-aacgttaaatgatttttgttaaactagatttcatatatgctctgattaattttc |
2271199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 69 - 160
Target Start/End: Original strand, 2270516 - 2270607
Alignment:
| Q |
69 |
tttttgttacctcataaacaagcatacacttcatcacctaatcaaactttaatttgaagtaaaatcaacaagtttgtgtttgattatttttt |
160 |
Q |
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| T |
2270516 |
tttttgttacttcataaacaagcatgcatttcatcacctaatcaaaccttaatttgaggtataatcaataagtttgtgtatgattctttttt |
2270607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 85
Target Start/End: Complemental strand, 46548022 - 46547989
Alignment:
| Q |
52 |
aattaattcaaaatcaatttttgttacctcataa |
85 |
Q |
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| T |
46548022 |
aattaattcaaaatcaatttttgttaccgcataa |
46547989 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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